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📝 add new experiment strategy #696

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merged 3 commits into from
Nov 15, 2024
Merged

📝 add new experiment strategy #696

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9ee791b
:memo: add new experiment strategy
HuangXiaoyan0106 Nov 13, 2024
12f86c2
:rocket: add Methylation platform
HuangXiaoyan0106 Nov 13, 2024
2e74e6a
:lipstick: update
HuangXiaoyan0106 Nov 13, 2024
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10 changes: 9 additions & 1 deletion dataservice/api/sequencing_experiment/schemas.py
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Expand Up @@ -17,13 +17,21 @@
'Linked-Read WGS (10x Chromium)',
'Targeted Sequencing', 'Methylation',
'Panel', 'scRNA-Seq', 'snRNA-Seq', 'Other',
'snATAC-Seq', 'Proteomics',
'Circular Consensus Sequencing RNA-Seq',
'Circular Consensus Sequencing WGS',
'Continuous Long Reads RNA-Seq',
'Continuous Long Reads WGS',
'ONT WGS'}
PLATFORM_ENUM = {'DNBSEQ', 'Illumina', 'SOLiD', 'LS454', 'Ion Torrent',
'Complete Genomics', 'PacBio', 'ONT', 'Other'}
'Complete Genomics', 'PacBio', 'ONT', 'Other',
'Illumina Infinium HumanMethylation450',
'Illumina Infinium HumanMethylationEPIC',
'Illumina Infinium HumanMethylationEPICv2',
'Illumina Infinium HumanMethylation27k',
'Roche NimbleGen MethylationSeq',
'Agilent SurePrint Methyl-Seq'}

LIBRARY_STRAND_ENUM = {'Stranded', 'Unstranded', 'First Stranded',
'Second Stranded', 'Other'}

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