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✅ update workflow_type and data_tyep enum #693

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Sep 12, 2024
Merged

✅ update workflow_type and data_tyep enum #693

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29 changes: 29 additions & 0 deletions dataservice/api/genomic_file/schemas.py
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Original file line number Diff line number Diff line change
Expand Up @@ -147,6 +147,34 @@
"QC Metrics",
"WGS Metrics",
"WXS Metrics",
"Annotated Germline Copy Number Segments",
"Annotated Tumor Only Mutation",
"Annotated Tumor Only Mutation Index",
"Denoised Germline Copy Ratios",
"Familial Relationships",
"Familial Relationships Report",
"Genotyped Germline Copy Number Intervals",
"Genotyped Germline Copy Number Intervals Index",
"Genotyped Germline Copy Number Segments",
"Genotyped Germline Copy Number Segments Index",
"Germline Copy Number Read Depth Stats",
"HLA Genotyping",
"Masked Tumor Only Mutation",
"Masked Tumor Only Mutation Index",
"Pre-pass Tumor Only Structural Variation",
"Pre-pass Tumor Only Structural Variation Index",
"Raw Germline Copy Number Segments",
"Raw Tumor Only Copy Number Segment",
"Raw Tumor Only Structural Variation",
"Raw Tumor Only Structural Variation Index",
"Raw Variant Call",
"Raw Variant Call Index",
"Tumor Only Assembled Haplotypes",
"Tumor Only Assembled Haplotypes Index",
"Tumor Only Copy Number BAF",
"Tumor Only Copy Number Ratio",
"Tumor Only Copy Number Variation",
"Tumor Only Structural Variation"
}

PAIRED_END_ENUM = {1, 2}
Expand All @@ -160,6 +188,7 @@
"RNAseq-Analysis",
"Single-VCF-Genotyping",
"Somatic-Mutation",
"Tumor-Only-Mutation"
}

FILE_VERSION_DESCRIPTOR_ENUM = {
Expand Down