Fix nnunet conda env #383
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Fix nnunet conda env #383
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This PR resolves issue #380. To achieve this, I put a custom
nnunetconda package, i.e.,nnunet-inference-on-cpu-and-gpu=1.6.6on our khanlab channel and pull from it for creating conda env while runninghippunfold. The issue was stemming from the version of pytorch used in building nnunet's conda package and after pinning it tov1.10.0in its recipe, I was successfully able to get past therun_inferencerule. I just ran the pipeline with--untill run_inferencebut ideally I'd like to run an entire end to end session before we merge.