feat: clean up reads

jlanga · Apr 17, 2024 · 4fe9e6d · 4fe9e6d
1 parent 9acfcc0
commit 4fe9e6d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/rules/reads/__main__.smk b/workflow/rules/reads/__main__.smk
@@ -15,8 +15,8 @@ rule reads__link__:
         "__environment__.yml"
     shell:
         """
-        ln --symbolic $(readlink --canonicalize {input.forward_}) {output.forward_}
-        ln --symbolic $(readlink --canonicalize {input.reverse_}) {output.reverse_}
+        ln --symbolic $(readlink --canonicalize {input.forward_}) {output.forward_} 2> {log}
+        ln --symbolic $(readlink --canonicalize {input.reverse_}) {output.reverse_} 2>> {log}
         """