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|---|---|---|
| @@ -1,13 +1,11 @@ | ||
| # Environment for fst subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - python>=3.5 | ||
| - perl=5.22.0 | ||
| - numpy=1.24.3 | ||
| - pigz=2.6 | ||
| - r-tidyverse=2.0.0 | ||
| - r-argparse=2.2.2 | ||
| - python =3.12.2 | ||
| - perl =5.32.1 | ||
| - numpy =1.26.4 | ||
| - pigz =2.8 | ||
| - r-tidyverse =2.0.0 | ||
| - r-argparse =2.2.3 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,6 @@ | ||
| # Environment for generic subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - samtools=1.17.0 | ||
| - samtools =1.19.2 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,12 +1,10 @@ | ||
| # Environment for hp subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - python>=3.5 | ||
| - pigz=2.6 | ||
| - r-tidyverse=2.0.0 | ||
| - r-argparse=2.2.2 | ||
| - numpy=1.24.3 | ||
| - python =3.12.2 | ||
| - pigz =2.8 | ||
| - r-tidyverse =2.0.0 | ||
| - r-argparse =2.2.3 | ||
| - numpy =1.26.4 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,8 @@ | ||
| # Environment for mpileup subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - samtools=1.17.0 | ||
| - python>=3 | ||
| - perl=5.22.0 | ||
| - samtools =1.19.2 | ||
| - python =3.12.2 | ||
| - perl =5.32.1 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,9 @@ | ||
| # Environment for popoolation subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - perl=5.22.0 | ||
| - pigz=2.6 | ||
| - r-tidyverse=2.0.0 | ||
| - r-argparse=2.2.2 | ||
| - perl =5.32.1 | ||
| - pigz =2.8 | ||
| - r-tidyverse =2.0.0 | ||
| - r-argparse =2.2.3 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,8 @@ | ||
| # Environment for qc subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - trimmomatic=0.36 # Greater than 0.36 breaks the process substitution trick | ||
| - gzip=1.12 | ||
| - pigz=2.6 | ||
| - trimmomatic =0.39 | ||
| - gzip =1.13 | ||
| - pigz =2.8 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,8 +1,6 @@ | ||
| # Environment for raw subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - gzip=1.12 | ||
| - gzip =1.13 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,8 @@ | ||
| # Environment for sync subworkflow | ||
| --- | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - nodefaults | ||
| dependencies: | ||
| - perl=5.22.0 | ||
| - pigz=2.6 | ||
| - openjdk=20.0.0 | ||
| - perl =5.32.1 | ||
| - pigz =2.8 | ||
| - openjdk =21.0.2 |