VirSorter2 version 2.2.4

[2.2.4] - 2022-01-18

• Fix issues with numpy v1.24 by limiting numpy version <1.24
• Change "singularity" to "apptainer" in README
• Add "PROVIRUS_MIN_HALLMARK_CNT" in template-config-original.yaml for tuning prophage search in provirus.py
• Add new cols: "final_max_score_group" and "final_max_score" in final-viral-boundary.tsv to be consistent with "max_score_group" and "max_score" in final-viral-score.tsv
• Remove records in final-viral-boundary.tsv but not in final-viral-score.tsv

Version 2.2.3

VirSorter2 version 2.2.3

Version 2.2.2

[2.2.2] - 2021-04-20

• Fix bug with --seqname-suffix-off causing error with DRAMv

Version 2.2.1

VirSorter version 2.2.1

Version 2.2

VirSorter version 2.2

[2.2] - 2021-03-30

• Add --viral-gene-enrich-off option
• Add --seqname-suffix-off option
• Change default --include-groups from all groups to dsDNAphage and ssDNA
• Add FAQ, viral identification SOP link in README

Version 2.1

[2.1] - 2021-01-15

Added

• Add --keep-original-seq option
• Add --high-confidence-only
• Add --exclude-lt2gene option

Changed

• Remove more itermediate files by default
• Change HMMER3.3.1 to HMMER3.3; HMMER3.3.1 throws seg fault with low complexity
  sequences

Version 2.0

VirSorter version 2.0 - 2020-12-01

Added

• Add --viral-gene-required
• Add --hallmark-required
• Add --hallmark-required-on-short
• Add --prep-for-dramv
• Add --label in virsorter run to allow adding prefix to output files
• Add shape to boundry file

Changed

• Apply length prefilter to provirus.py; skip all seqs length < min(3000, MIN_GENOME_SIZE)
• Limit max file splits to 1000

Version 2.0.beta

VirSorter version 2.0.beta

Version 2.0.alpha

VirSorter version 2.0.alpha

Version 2.0.alpha

first release, version 2.0.alpha