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The file is the first made available on this website https://www.unidata.ucar.edu/software/netcdf/examples/files.html. I attached it to the issue: sresa1b_ncar_ccsm3-example.nc.zip
import hvplot.xarray import xarray as xr ds = xr.open_dataset("sresa1b_ncar_ccsm3-example.nc") ds.hvplot.explorer()
ValueError: cannot select an axis to squeeze out which has size not equal to one
WARNING:param.Image02227: Image dimension lat is not evenly sampled to relative tolerance of 0.001. Please use the QuadMesh element for irregularly sampled data or set a higher tolerance on hv.config.image_rtol or the rtol parameter in the Image constructor. WARNING:param.Image02227: Image dimension lat is not evenly sampled to relative tolerance of 0.001. Please use the QuadMesh element for irregularly sampled data or set a higher tolerance on hv.config.image_rtol or the rtol parameter in the Image constructor. --------------------------------------------------------------------------- ValueError Traceback (most recent call last) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/IPython/core/formatters.py:974, in MimeBundleFormatter.__call__(self, obj, include, exclude) 971 method = get_real_method(obj, self.print_method) 973 if method is not None: --> 974 return method(include=include, exclude=exclude) 975 return None 976 else: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/viewable.py:1096, in Viewer._repr_mimebundle_(self, include, exclude) 1095 def _repr_mimebundle_(self, include=None, exclude=None): -> 1096 return self._create_view()._repr_mimebundle_(include, exclude) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/viewable.py:820, in Viewable._repr_mimebundle_(self, include, exclude) 818 doc = Document() 819 comm = state._comm_manager.get_server_comm() --> 820 model = self._render_model(doc, comm) 821 if config.embed: 822 return render_model(model) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/viewable.py:738, in Viewable._render_model(self, doc, comm) 736 if comm is None: 737 comm = state._comm_manager.get_server_comm() --> 738 model = self.get_root(doc, comm) 740 if self._design and self._design.theme.bokeh_theme: 741 doc.theme = self._design.theme.bokeh_theme File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:306, in Panel.get_root(self, doc, comm, preprocess) 302 def get_root( 303 self, doc: Optional[Document] = None, comm: Optional[Comm] = None, 304 preprocess: bool = True 305 ) -> Model: --> 306 root = super().get_root(doc, comm, preprocess) 307 # ALERT: Find a better way to handle this 308 if hasattr(root, 'styles') and 'overflow-x' in root.styles: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/viewable.py:660, in Renderable.get_root(self, doc, comm, preprocess) 658 wrapper = self._design._wrapper(self) 659 if wrapper is self: --> 660 root = self._get_model(doc, comm=comm) 661 if preprocess: 662 self._preprocess(root) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:174, in Panel._get_model(self, doc, root, parent, comm) 172 root = root or model 173 self._models[root.ref['id']] = (model, parent) --> 174 objects, _ = self._get_objects(model, [], doc, root, comm) 175 props = self._get_properties(doc) 176 props[self._property_mapping['objects']] = objects File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:156, in Panel._get_objects(self, model, old_objects, doc, root, comm) 154 else: 155 try: --> 156 child = pane._get_model(doc, root, model, comm) 157 except RerenderError as e: 158 if e.layout is not None and e.layout is not self: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:174, in Panel._get_model(self, doc, root, parent, comm) 172 root = root or model 173 self._models[root.ref['id']] = (model, parent) --> 174 objects, _ = self._get_objects(model, [], doc, root, comm) 175 props = self._get_properties(doc) 176 props[self._property_mapping['objects']] = objects File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:156, in Panel._get_objects(self, model, old_objects, doc, root, comm) 154 else: 155 try: --> 156 child = pane._get_model(doc, root, model, comm) 157 except RerenderError as e: 158 if e.layout is not None and e.layout is not self: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:174, in Panel._get_model(self, doc, root, parent, comm) 172 root = root or model 173 self._models[root.ref['id']] = (model, parent) --> 174 objects, _ = self._get_objects(model, [], doc, root, comm) 175 props = self._get_properties(doc) 176 props[self._property_mapping['objects']] = objects File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/tabs.py:211, in Tabs._get_objects(self, model, old_objects, doc, root, comm) 209 else: 210 try: --> 211 rendered[pref] = child = pane._get_model(doc, root, model, comm) 212 except RerenderError as e: 213 if e.layout is not None and e.layout is not self: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:174, in Panel._get_model(self, doc, root, parent, comm) 172 root = root or model 173 self._models[root.ref['id']] = (model, parent) --> 174 objects, _ = self._get_objects(model, [], doc, root, comm) 175 props = self._get_properties(doc) 176 props[self._property_mapping['objects']] = objects File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:156, in Panel._get_objects(self, model, old_objects, doc, root, comm) 154 else: 155 try: --> 156 child = pane._get_model(doc, root, model, comm) 157 except RerenderError as e: 158 if e.layout is not None and e.layout is not self: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:174, in Panel._get_model(self, doc, root, parent, comm) 172 root = root or model 173 self._models[root.ref['id']] = (model, parent) --> 174 objects, _ = self._get_objects(model, [], doc, root, comm) 175 props = self._get_properties(doc) 176 props[self._property_mapping['objects']] = objects File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/layout/base.py:156, in Panel._get_objects(self, model, old_objects, doc, root, comm) 154 else: 155 try: --> 156 child = pane._get_model(doc, root, model, comm) 157 except RerenderError as e: 158 if e.layout is not None and e.layout is not self: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/pane/holoviews.py:413, in HoloViews._get_model(self, doc, root, parent, comm) 411 plot = self.object 412 else: --> 413 plot = self._render(doc, comm, root) 415 plot.pane = self 416 backend = plot.renderer.backend File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/panel/pane/holoviews.py:508, in HoloViews._render(self, doc, comm, root) 505 if comm: 506 kwargs['comm'] = comm --> 508 return renderer.get_plot(self.object, **kwargs) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/plotting/bokeh/renderer.py:68, in BokehRenderer.get_plot(self_or_cls, obj, doc, renderer, **kwargs) 61 @bothmethod 62 def get_plot(self_or_cls, obj, doc=None, renderer=None, **kwargs): 63 """ 64 Given a HoloViews Viewable return a corresponding plot instance. 65 Allows supplying a document attach the plot to, useful when 66 combining the bokeh model with another plot. 67 """ ---> 68 plot = super().get_plot(obj, doc, renderer, **kwargs) 69 if plot.document is None: 70 plot.document = Document() if self_or_cls.notebook_context else curdoc() File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/plotting/renderer.py:240, in Renderer.get_plot(self_or_cls, obj, doc, renderer, comm, **kwargs) 237 defaults = [kd.default for kd in plot.dimensions] 238 init_key = tuple(v if d is None else d for v, d in 239 zip(plot.keys[0], defaults)) --> 240 plot.update(init_key) 241 else: 242 plot = obj File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/plotting/plot.py:955, in DimensionedPlot.update(self, key) 953 def update(self, key): 954 if len(self) == 1 and key in (0, self.keys[0]) and not self.drawn: --> 955 return self.initialize_plot() 956 item = self.__getitem__(key) 957 self.traverse(lambda x: setattr(x, '_updated', True)) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/plotting/bokeh/element.py:1887, in ElementPlot.initialize_plot(self, ranges, plot, plots, source) 1885 if self.autorange: 1886 self._setup_autorange() -> 1887 self._init_glyphs(plot, element, ranges, source) 1888 if not self.overlaid: 1889 self._update_plot(key, plot, style_element) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/plotting/bokeh/element.py:1806, in ElementPlot._init_glyphs(self, plot, element, ranges, source) 1804 else: 1805 style = self.style[self.cyclic_index] -> 1806 data, mapping, style = self.get_data(element, ranges, style) 1807 current_id = element._plot_id 1809 with abbreviated_exception(): File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/plotting/bokeh/raster.py:109, in RasterPlot.get_data(self, element, ranges, style) 107 if i > 2 and 'hover' not in self.handles: 108 break --> 109 img = element.dimension_values(i, flat=False) 110 if img.dtype.kind == 'b': 111 img = img.astype(np.int8) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/core/data/__init__.py:196, in PipelineMeta.pipelined.<locals>.pipelined_fn(*args, **kwargs) 193 inst._in_method = True 195 try: --> 196 result = method_fn(*args, **kwargs) 197 if PipelineMeta.disable: 198 return result File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/core/data/__init__.py:1099, in Dataset.dimension_values(self, dimension, expanded, flat) 1083 """Return the values along the requested dimension. 1084 1085 Args: (...) 1096 NumPy array of values along the requested dimension 1097 """ 1098 dim = self.get_dimension(dimension, strict=True) -> 1099 values = self.interface.values(self, dim, expanded, flat) 1100 if dim.nodata is not None: 1101 # Ensure nodata applies to boolean data in py2 1102 values = np.where(values==dim.nodata, np.nan, values) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/core/data/xarray.py:423, in XArrayInterface.values(cls, dataset, dim, expanded, flat, compute, keep_index) 421 data = cupy.asnumpy(data) 422 if not keep_index: --> 423 data = cls.canonicalize(dataset, data, data_coords=data_coords, 424 virtual_coords=virtual_coords) 425 return data.T.flatten() if flat and not keep_index else data 426 elif expanded: File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/holoviews/core/data/grid.py:329, in GridInterface.canonicalize(cls, dataset, data, data_coords, virtual_coords) 327 data = data.flatten() 328 else: --> 329 data = np.squeeze(data, axis=tuple(dropped)) 331 if not any(cls.irregular(dataset, d) for d in dataset.kdims): 332 inds = [dims.index(kd.name) for kd in dataset.kdims] File <__array_function__ internals>:200, in squeeze(*args, **kwargs) File ~/miniconda3/envs/hvplot310/lib/python3.10/site-packages/numpy/core/fromnumeric.py:1571, in squeeze(a, axis) 1569 return squeeze() 1570 else: -> 1571 return squeeze(axis=axis) ValueError: cannot select an axis to squeeze out which has size not equal to one
Issue observed when trying #1256
The text was updated successfully, but these errors were encountered:
Successfully merging a pull request may close this issue.
The file is the first made available on this website https://www.unidata.ucar.edu/software/netcdf/examples/files.html. I attached it to the issue:
sresa1b_ncar_ccsm3-example.nc.zip
Full traceback
Issue observed when trying #1256
The text was updated successfully, but these errors were encountered: