temporarily rollback svtyper to v0.0.4, to avoid a bug in dup and inv… · hall-lab/speedseq@59a2b58

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temporarily rollback svtyper to v0.0.4, to avoid a bug in dup and inv…

…ersion genotyping

cc2qe committed Dec 6, 2016

1 parent 5f4fe08 commit 59a2b58

+0 −54		.travis.yml
+17 −57		README.md
+ −		etc/het.png
+ −		etc/hom_alt.png
+ −		etc/hom_ref.png
+ −		etc/my.bam.json.pdf
+ −		etc/my.bam.json.png
+0 −1		requirements.txt
+424 −0		scripts/batchtyper
+0 −48		scripts/lib_stats.R
+19 −0		scripts/sv_counts.sh
+523 −1,101		svtyper
+0 −808		test/NA12878.bam.json
+ −		test/NA12878.target_loci.sorted.bam
+ −		test/NA12878.target_loci.sorted.bam.bai
+716 −0		test/NA12893.het.vcf
+92 −0		test/NA12893.hom.vcf
+0 −354		test/example.gt.vcf
+0 −344		test/example.vcf
+14 −0		test/results.txt
+37 −0		test/run_svtyper.sh
+0 −1		test/svtyper.py
+0 −22		test/test.sh
+0 −51		test/test_svtyper.py