Merge pull request #1370 from mvdbeek/shed_lint_biocontainers

Add ``--biocontainers`` option to shed_lint
galaxyproject · Jun 3, 2023 · b0bb34c · b0bb34c
2 parents 1aa3eb0 + 2c1bbff
commit b0bb34c
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Showing 3 changed files with 13 additions and 8 deletions.
diff --git a/planemo/commands/cmd_lint.py b/planemo/commands/cmd_lint.py
@@ -35,14 +35,7 @@
     default=False,
     help="Check tool requirements for availability in best practice Conda channels.",
 )
-@click.option(
-    "biocontainer",
-    "--biocontainer",
-    "--biocontainers",
-    is_flag=True,
-    default=False,
-    help="Check best practice BioContainer namespaces for a container definition applicable for this tool.",
-)
+@options.lint_biocontainers_option()
 # @click.option(
 # "--verify",
 # is_flag=True,

diff --git a/planemo/commands/cmd_shed_lint.py b/planemo/commands/cmd_shed_lint.py
@@ -32,6 +32,7 @@
     default=False,
     help="Check validity of URLs in XML files",
 )
+@options.lint_biocontainers_option()
 # @click.option(
 #     "--verify",
 #     is_flag=True,

diff --git a/planemo/options.py b/planemo/options.py
@@ -1357,6 +1357,17 @@ def lint_xsd_option():
     )
 
 
+def lint_biocontainers_option():
+    return planemo_option(
+        "biocontainer",
+        "--biocontainer",
+        "--biocontainers",
+        is_flag=True,
+        default=False,
+        help="Check best practice BioContainer namespaces for a container definition applicable for this tool.",
+    )
+
+
 def report_level_option():
     return planemo_option(
         "--report_level",