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added function stitch from PR188, with options `residues_to_add` and `bonds_to_use` #306

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rwxayheee wants to merge 1 commit into forlilab:develop from rwxayheee:stitch-chorizo-2

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added function stitch from PR188, with options `residues_to_add` and `bonds_to_use` #306

added function stitch from PR188, with options

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