By Henry Bosch, Filippos Nakas, and Max White as part of the Stanford CS224W course project
Jupyter notebook for running classic Knowledge Graph Embedding methods on graphs representation of common ontologies in biological sciences using PyTorch Geometric. Includes the definition of a new method (subsetE) that tries to leverage the class hierarchy that is characteristic of most ontologies. The task, code, and theory are explained in detail in the following Medium post: https://medium.com/@maxwell.oliver.white/a99989e79ac