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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 243 repositories
  • NGS_Tar_deletion Public

    automated deletion of NGS .tar files on DNAnexus

    eastgenomics/NGS_Tar_deletion’s past year of commit activity
    0 0 0 1 Updated Feb 25, 2025
  • vcf_haemonc_annotation_from_inca_creator Public

    Development and testing of annotation VCF for haemonc annotation from Inca CSV

    eastgenomics/vcf_haemonc_annotation_from_inca_creator’s past year of commit activity
    Python 0 0 0 0 Updated Feb 25, 2025
  • automated-archiving Public

    Python script to monitor archiving on DNANexus

    eastgenomics/automated-archiving’s past year of commit activity
    Python 2 0 4 0 Updated Feb 25, 2025
  • eggd_001_Reference Public
    eastgenomics/eggd_001_Reference’s past year of commit activity
    Perl 1 1 9 (1 issue needs help) 2 Updated Feb 24, 2025
  • eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    eastgenomics/eggd_generate_variant_workbook’s past year of commit activity
    Python 3 0 7 0 Updated Feb 24, 2025
  • eggd_fusioninspector Public
    eastgenomics/eggd_fusioninspector’s past year of commit activity
    Shell 2 MIT 0 0 0 Updated Feb 24, 2025
  • egg5_dias_CEN_config Public
    eastgenomics/egg5_dias_CEN_config’s past year of commit activity
    2 MIT 0 1 0 Updated Feb 21, 2025
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 2 0 Updated Feb 21, 2025
  • ici_reports_export Public

    Fetches information from completed ICI reports, reformats and deposits to local storage

    eastgenomics/ici_reports_export’s past year of commit activity
    0 MIT 0 1 1 Updated Feb 21, 2025
  • themis Public

    Code for internal bioinformatics team auditing

    eastgenomics/themis’s past year of commit activity
    Python 3 MIT 0 2 1 Updated Feb 21, 2025
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