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Use results from SBI index instead of ignoring them #124

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merged 2 commits into from
Dec 12, 2019

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lbergelson
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@wangdy12 I believe this fixes the problem. I'm shocked we never noticed that before, but I guess I always run with verbosity higher than debug.

* We were querying the SBI index, throwing those results away, and then split-guessing.
* Now the sbi results are used if they are available.
* Fixes #123
@lbergelson
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@heuermh Could you take a look at this one when you get a chance? It's a pretty nasty bug.

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heuermh commented Dec 12, 2019

@lbergelson Thanks for the ping, sorry I left this sitting so long. Do you want to squash commits and rebase, or shall I do it with the GitHub Squash and Merge button?

@heuermh heuermh added this to the 0.4.0 milestone Dec 12, 2019
@lbergelson
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No worries, I just wanted to be sure you had noticed it. Thanks for taking a look.

@heuermh heuermh merged commit 3aefc06 into master Dec 12, 2019
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heuermh commented Dec 12, 2019

Thank you, @lbergelson @wangdy12

@lbergelson lbergelson deleted the lb_use_splits_from_sbi branch December 18, 2019 15:58
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BamSource doesn't return right when using SBIIndex
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