Hot fix for python bindings failing (resolve #104)

[nleroy917]

Todo:

• Bump version
• Update changelog
• Test python digests API

Issue for tracking: #104

To test the python API, I will emulate the Rust API tests:

import sys
from gtars.digests import sha512t24u_digest, md5_digest, digest_fasta

digest = sha512t24u_digest(b"hello world")
print("sha512t24u_digest(b'hello world') =>", digest)
assert digest == "MJ7MSJwS1utMxA9QyQLytNDtd-5RGnx6"

# Test sha512t24u_digest on str
digest = sha512t24u_digest("hello world")
print("sha512t24u_digest('hello world') =>", digest)
assert digest == "MJ7MSJwS1utMxA9QyQLytNDtd-5RGnx6"

# Test md5_digest
digest = md5_digest("hello world")
print("md5_digest('hello world') =>", digest)
assert digest == "5eb63bbbe01eeed093cb22bb8f5acdc3"

# Test digest_fasta on an uncompressed file
results = digest_fasta("gtars/tests/data/base.fa")
print("digest_fasta('gtars/tests/data/base.fa') =>", results)
assert len(results) == 3
assert results[0].length == 8
assert results[0].sha512t24u == "iYtREV555dUFKg2_agSJW6suquUyPpMw"
assert results[0].md5 == "5f63cfaa3ef61f88c9635fb9d18ec945"

assert results[1].length == 4
assert results[1].sha512t24u == "YBbVX0dLKG1ieEDCiMmkrTZFt_Z5Vdaj"
assert results[1].md5 == "31fc6ca291a32fb9df82b85e5f077e31"

assert results[2].length == 4
assert results[2].sha512t24u == "AcLxtBuKEPk_7PGE_H4dGElwZHCujwH6"
assert results[2].md5 == "92c6a56c9e9459d8a42b96f7884710bc"

# Test digest_fasta on a gzipped FASTA
results_gz = digest_fasta("gtars/tests/data/base.fa.gz")
print("digest_fasta('gtars/tests/data/base.fa.gz') =>", results_gz)
assert results_gz[0].length == 8
assert results_gz[0].sha512t24u == "iYtREV555dUFKg2_agSJW6suquUyPpMw"
assert results_gz[0].md5 == "5f63cfaa3ef61f88c9635fb9d18ec945"

# Test error handling
try:
    digest_fasta("gtars/tests/data/bogus.fa")
    # If we reach here, no error was raised, so fail
    print("Expected error for bogus file but none raised!")
    sys.exit(1)
except Exception as e:
    print("Got expected error for bogus file:", e)

print("All tests passed!")

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 62.36%. Comparing base (d345694) to head (9be1f90).
Report is 8 commits behind head on master.

Additional details and impacted files

@@           Coverage Diff           @@
##           master     #102   +/-   ##
=======================================
  Coverage   62.36%   62.36%           
=======================================
  Files          38       38           
  Lines        6438     6438           
=======================================
  Hits         4015     4015           
  Misses       2423     2423           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[nleroy917]

Seems to be good -- will bump version and release