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[RELEASE] v2.1.0#131

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Merged

nightwnvol merged 72 commits intomasterdaducci/COMMIT:masterfrom release/v2.1.0daducci/COMMIT:release/v2.1.0Copy head branch name to clipboardJan 22, 2024

+743-381

Commits

Commits on Oct 19, 2023

• adding wip model implementation

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Commits on Oct 20, 2023

• refactor: move VolumeFractions model from dmri-amico

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• removed print

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• Merge branch 'wip_model' of https://github.com/daducci/COMMIT into wip_model

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• fixed import, removed print

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• fixed path append

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• fix commitwipmodels handling

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• fixed VolumeFractions class in model

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Commits on Oct 24, 2023

• fix

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• modified trk2dictionary to save ISO

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• fix on core

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• fix on core

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Commits on Oct 25, 2023

• fixing segmentation fault during fit

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Commits on Oct 26, 2023

• changed print number of voxels ISO compartment

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Commits on Nov 7, 2023

• fixed error with ISO compartment

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Commits on Nov 15, 2023

• check compiled files

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Commits on Nov 17, 2023

• Proposed fix

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Commits on Nov 21, 2023

• fixed if run w/o mask

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Commits on Nov 29, 2023

• added dictionary of parameters as input to postprocess function

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• changed verbosity default level

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Commits on Dec 1, 2023

• Reorder parameters

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• Removed unused statement

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• Commented unused norms

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• Commented unused norms

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• Commented unused norms

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• Added scaling parameter to prox (to account,possibly, for step_size)

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• Increased version

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• Removed unused returns in proximal operators

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• Considered step_size also in group sparsity prox

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Commits on Dec 4, 2023

• Added scaling parameter to overall prox function

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• Replaced sum with l1 norm to consider possible cases with negative x coeffs

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• Added explicitly 'None' as possible regularization norm

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• Separated non_negativity from the regularizers

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• Fixed segmentation fault

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• Removed group_norm option

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• Removed group_norm option

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• Renamed parameters for clarity

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• Renamed parameters for clarity

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• Renamed parameters for clarity

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Commits on Dec 5, 2023

• refactor: 'operator' module reload

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• chore: don't write 'operator.pyc' in __pycache__

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• build: bump to v2.0.2

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Commits on Dec 6, 2023

• Merge pull request #127 from daducci/bug_build_operator

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• Merge pull request #129 from daducci/fix_fista_update

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• docs: update CHANGELOG.md

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• Fixed if condition for reg_EC and removed unused parameter in group sparsity omega

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Commits on Dec 7, 2023

• implementation of sparse group lasso regularization

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Commits on Dec 12, 2023

• fix: import indentation

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• Removed authorship statements for uniformity, contributors are acknowledged in Credits page

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• Removed 'from __future__ import print_function' statements

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• Remove unused Version: ImageMagick 7.1.1-22 Q16-HDRI aarch64 21779 https://imagemagick.org

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Commits on Dec 13, 2023

• first implementation reweight

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• Merge branch 'release/v2.0.2' of https://github.com/daducci/COMMIT into sparse_group_lasso

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• fix after merge

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• fixed and update solvers

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• Fixed weighted soft-thresholding proximal

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• fix variables init

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Commits on Dec 14, 2023

• working on init_regularisation

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Commits on Dec 21, 2023

• code refactoring

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• added check on regularisations

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• fixed lasso w/o weights

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• fix

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• fixed if no regularisation is used

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Commits on Jan 10, 2024

• Merge branch 'wip_model' into release/v2.1.0

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• build: bump version

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• docs: update CHANGELOG.md

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• fixed wip model load check

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• Merge branch 'release/v2.1.0' of https://github.com/daducci/COMMIT into release/v2.1.0

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Commits on Jan 22, 2024

• removed print for wip models

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• fixed ISO, fixed scheme parameter when using VolumeFractions

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• fixed import error with wip models

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• docs: update CHANGELOG.md

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