🎉 BCFTOOLS 1.20 (#240)

* 🎉 added bcftools with working plugins and complete htslib

* update docker table (#241)

Co-authored-by: migbro <migbro@users.noreply.github.com>

---------

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: migbro <migbro@users.noreply.github.com>

README.md

@@ -28,6 +28,7 @@ arriba|latest|docker pull pgc-images.sbgenomics.com/d3b-bixu/arriba:latest
 autopvs1|v1.0.1|docker pull pgc-images.sbgenomics.com/d3b-bixu/autopvs1:v1.0.1
 autopvs1|v2.0.0|docker pull pgc-images.sbgenomics.com/d3b-bixu/autopvs1:v2.0.0
 bcbio|variation_recall-0.2.4|docker pull pgc-images.sbgenomics.com/d3b-bixu/bcbio:variation_recall-0.2.4
+bcftools|1.20|docker pull pgc-images.sbgenomics.com/d3b-bixu/bcftools:1.20
 bed_tools|bedopsv2.4.36_plus_bedtools|docker pull pgc-images.sbgenomics.com/d3b-bixu/bed_tools:bedopsv2.4.36_plus_bedtools
 BIC-seq2|0.7.2|docker pull pgc-images.sbgenomics.com/d3b-bixu/bic-seq2:0.7.2
 bvcftools|latest|docker pull pgc-images.sbgenomics.com/d3b-bixu/bvcftools:latest

bcftools/1.20/Dockerfile

@@ -0,0 +1,13 @@
+FROM ubuntu:22.04
+LABEL maintainer="Miguel Brown (brownm28@chop.edu)"
+
+ENV BCFTOOLS_VERSION 1.20
+ENV HTSLIB_VERSION 1.20
+ENV BCFTOOLS_PLUGINS=/bcftools-${BCFTOOLS_VERSION}/plugins
+RUN apt update && apt install -y wget build-essential zlib1g-dev libncurses5-dev libbz2-dev liblzma-dev libcurl4-openssl-dev libssl-dev
+RUN wget -q https://github.com/samtools/bcftools/releases/download/${BCFTOOLS_VERSION}/bcftools-${BCFTOOLS_VERSION}.tar.bz2
+RUN tar xjvf bcftools-${BCFTOOLS_VERSION}.tar.bz2 && \
+cd /bcftools-${BCFTOOLS_VERSION}/ && ./configure && make && make install
+RUN cd /bcftools-${BCFTOOLS_VERSION}/htslib-${HTSLIB_VERSION}/ && ./configure && make && make install
+RUN rm bcftools-${BCFTOOLS_VERSION}.tar.bz2 && apt clean build-essential zlib1g-dev wget && apt -y autoclean && apt -y autoremove
+COPY Dockerfile .