GitHub - ctb/eel-pond

2 Branches 1 Tag

Name	Name	Last commit message	Last commit date
Latest commit ctb fix? Oct 31, 2014 80351d9 · Oct 31, 2014 History 44 Commits
data	data	added new reciprocal script	Jul 19, 2013
notebooks	notebooks	Merge ../eel-pond.dylan	Jul 24, 2013
.gitignore	.gitignore	added scripts needed for differential expression	Dec 8, 2013
Makefile	Makefile	Merge branch 'master' of https://github.com/DylanLukes/eel-pond into …	Jul 24, 2013
accession_lookup.py	accession_lookup.py	new make tasks, genes of interest, notebooks...	Jul 17, 2013
annotate-partitions-with-mouse.py	annotate-partitions-with-mouse.py	more	Jul 12, 2013
annotate-seqs.py	annotate-seqs.py	fixed problems where mouse database changes	Dec 13, 2013
best_match.py	best_match.py	forgot to close handles; minor fix	Jul 15, 2013
blastparser.py	blastparser.py	whoops, fixed blastparser	Aug 8, 2013
extract-and-annotate-changed.py	extract-and-annotate-changed.py	added scripts needed for differential expression	Dec 8, 2013
extract-longest-sequence-by-partition.py	extract-longest-sequence-by-partition.py	more	Jul 12, 2013
legacy	legacy	Bundle of eight squashed commits:	Jul 16, 2013
lymphilter.py	lymphilter.py	Bundle of eight squashed commits:	Jul 16, 2013
make-namedb.py	make-namedb.py	added automatic detection of NCBI databases and auto-name-muning when…	Oct 20, 2013
make-reciprocal-best-hits.py	make-reciprocal-best-hits.py	added automatic detection of NCBI databases and auto-name-muning when…	Oct 20, 2013
make-small.sh	make-small.sh	lamprey transcriptome paper foo	Jul 12, 2013
make-transcript-to-gene-map-file.py	make-transcript-to-gene-map-file.py	extract isoform information from lamp3	Aug 25, 2013
make-uni-best-hits.py	make-uni-best-hits.py	annot	Jul 18, 2013
namedb.py	namedb.py	added automatic detection of NCBI databases and auto-name-muning when…	Oct 20, 2013
parse_blast.py	parse_blast.py	added blast parsing stuff	Aug 8, 2013
plot-expression.py	plot-expression.py	fix?	Oct 31, 2014
reciprocals.py	reciprocals.py	added new reciprocal script	Jul 19, 2013
rename-with-partitions.py	rename-with-partitions.py	added more informative summary output; minor refactoring	Oct 20, 2013
split-fa.py	split-fa.py	annot	Jul 18, 2013
total_match.py	total_match.py	forgot to close handles; minor fix	Jul 15, 2013
unpack-genes-matrix.py	unpack-genes-matrix.py	added scripts needed for differential expression	Dec 8, 2013
unpack-isoforms-matrix.py	unpack-isoforms-matrix.py	added scripts needed for differential expression	Dec 8, 2013