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\cite > \citep, fixed citation styles, fixes #124. #138

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\cite > \citep, fixed citation styles, fixes #124. #138

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30 changes: 15 additions & 15 deletions paper.tex
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Expand Up @@ -73,10 +73,10 @@ \section*{Introduction}
motion capture techniques and high fidelity ground reaction load measurements.
Even though years of data on thousands of subjects now exist, this data is not
widely disseminated, well organized, nor available with few or no restrictions.
David Winter's published normative gait data, \cite{Winter1990}, is widely used
David Winter's published normative gait data \citep{Winter1990} is widely used
in biomechanical studies, yet it comes from few subjects and only a small
number of gait cycles per subject. This small source has successfully enabled
many other studies, such as powered prosthetic control design, \cite{Sup2008},
many other studies, such as powered prosthetic control design \citep{Sup2008}
but success in other research fields using large sets of data for discovery
lead one to believe that more elaborate data sets may benefit the field of
human motion studies. To enable such work, biomechanical data needs to be
Expand All @@ -95,12 +95,12 @@ \section*{Introduction}
\cite{Chester2007} report on a large gait database comparison where one
database contained kinematic data of 409 gait cycles of children from 1 to 7
years old but the data does not seem to be publicly available. This is,
unfortunately, typical. Tirosh et. al, recognized the need for a comprehensive
data base for clinical gait data and created the Gaitabase, \cite{Tirosh2010}.
This database may contain a substantial amount of data but it is encumbered by
a complicated and restrictive license and sharing scheme. However, there
are examples of data with less restrictions. The University of Wisconsin at
LaCrosse has an easily accessible normative gait data set, \cite{Willson2014},
unfortunately, typical. \cite{Tirosh2010} recognized the need for a
comprehensive data base for clinical gait data and created the Gaitabase. This
database may contain a substantial amount of data but it is encumbered by a
complicated and restrictive license and sharing scheme. However, there are
examples of data with less restrictions. The University of Wisconsin at
LaCrosse has an easily accessible normative gait data set \citep{Willson2014}
from 25 subjects with lower extremity marker data from multiple gait cycles and
force plate measurements from a single gait cycle.

Expand Down Expand Up @@ -147,7 +147,7 @@ \section*{Introduction}
of normal walking and eight minutes of walking under the influence of
pseudo-random belt speed fluctuations. The data has been organized complete
with rich meta data and made available in the most unrestrictive form for other
research uses following modern best practices in data sharing, \cite{White2013}.
research uses following modern best practices in data sharing \citep{White2013}.

Furthermore, we include a small Apache licensed open source software library
for basic gait analysis and demonstrate its use in the paper. The combination
Expand Down Expand Up @@ -374,7 +374,7 @@ \subsection*{Perturbation Signals}
induce error in the force plate $x$ axis moment, and hence, the
anterior-posterior coordinate ($z$ axis) of the center of pressure that is
measured by the instrumentation in the treadmill. If needed, this error can be
compensated by a linear model as shown by \cite{Hnat2014}. The model
compensated by a linear model as shown in \cite{Hnat2014}. The model
coefficients can be identified from the unloaded trials given in
Table~\ref{tab:comptrials}. The error due to inertia is random and does not
affect the averaged joint moments presented in
Expand Down Expand Up @@ -637,7 +637,7 @@ \subsubsection*{meta-xxx.yml}
file names and directories associated with this trial include this number.
\item[marker-map] A key value map which maps marker names in the mocap file
to the user's desired names for the markers.
\item[marker-set] Indicates the HBM~\cite{Bogert2013} marker set used during
\item[marker-set] Indicates the HBM~\citep{Bogert2013} marker set used during
the trial, either full, lower, or NA.
\item[nominal-speed] A float representing the nominal desired treadmill speed
during the trial.
Expand Down Expand Up @@ -722,8 +722,8 @@ \subsubsection*{meta-xxx.yml}

\subsection*{Processed Data}
%
We developed a toolkit for data processing, GaitAnalysisToolKit v0.1.2,
\cite{Moore2014a}, for common gait computations and provide an example
We developed a toolkit for data processing, GaitAnalysisToolKit v0.1.2
\citep{Moore2014a} for common gait computations and provide an example
processed trial to present the nature of the data. The tool was developed in
Python, is dependent on the SciPy Stack [NumPy~\citep{Walt2011},
SciPy~\citep{Jones2001}, matplotlib~\citep{Hunter2007},
Expand Down Expand Up @@ -910,7 +910,7 @@ \section*{Conclusion}

\section*{Data Availability}
%
The data set, \cite{Moore2014}, is available via the Zenodo data repository.
The data set \citep{Moore2014} is available via the Zenodo data repository.
Two approximately 1.2GB gzipped tar balls contain the data and a \verb|README|
file with a short description of the contents. The data is released under the
Creative Commons CC0 license (http://creativecommons.org/about/cc0) following
Expand All @@ -921,7 +921,7 @@ \section*{Software Availability}
The tables, figures, and the paper can be reproduced from the source
repository shared on Github: https://github.com/csu-hmc/perturbed-data-paper.
Along with the source code in the repository, the computations depend on
version 0.1.2 of the GaitAnalysisToolKit, \cite{Moore2014a}, which can be
version 0.1.2 of the GaitAnalysisToolKit \citep{Moore2014a} which can be
downloaded from Zenodo or the Python Package Index (http://pypi.python.org).

\section*{Author contributions}
Expand Down