Quigley et al, Cell 2018. Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.

[jjgao]

Paper: https://www.ncbi.nlm.nih.gov/pubmed/30033370

• create a issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• Document the curation process, e.g. how and by whom the data was transformed
• Follow the data checklist
• Create a pull request to datahub once the data is curated
• Push to triage portal
• Import into msk and public portal database
• Update cBioPortal news

[ritikakundra]

Liftover for the MAF will be required. This is hg38 build.

[jjgao]

@ritikakundra could you reply to the email and ask them if they have hg19 mutation data?

[ritikakundra]

Waiting for the lifted over MAF

[stale]

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[rmadupuri]

Treatment related clinical attributes are found here: https://github.com/DavidQuigley/WCDT/blob/master/clinical_metadata/2021_03_24_cell_2018.txt.

Data source was shared by the co-author (Rahul Aggarwal) when contacted for another study #265. Looks like the patients in this study are a subset of the Aggarwal et al. JCO 2018 study (datahub issue 265). We are still waiting on the complete patient list for issue 265.

[stale]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.