Code

Volcano plot part1#753

Code

Merged

jjgao merged 63 commits intocBioPortal:rccBioPortal/cbioportal:rcfrom thehyve:volcano_plot_part1thehyve/cbioportal:volcano_plot_part1Copy head branch name to clipboardJan 27, 2016

+1,636-134

Commits

Commits on Nov 9, 2015

• volcano plot view using Scatterplots.js

  

  pieter

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  04fb973

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• code now using only Scatterplots.js

  

  pieter

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  f0f3aa5

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• added the option to add a volcano plot representation of the data.

  

  pieter

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• removed field cytoband to free up some space in the UI

  

  pieter

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• made drawCoExpInfo optional

  

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• added volcano_plot_view.js

  

  pieter

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Commits on Nov 10, 2015

• sending original json data to callback function

  

  pieter

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• small fixes and enhancements; further integrated plot with datatable to

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  pieter

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• implemented scatterPlotBrushCallBack and special selection cases

  

  pieter

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• implemented special selection cases, added support for optional

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  pieter

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• added ScatterPlots.js

  

  pieter

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• increased width of gene column

  

  pieter

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• renamed method

  

  pieter

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• added correct formatting for qtip

  

  pieter

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• added documentation to new methods

  

  pieter

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  18f24d4

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• added comments; removed unnecessary code

  

  pieter

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• updated code, removed unnecessary parts

  

  pieter

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• small documentation improvement

  

  pieter

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  b18b07c

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• improved comments

  

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• code clean-up

  

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• merge of rc

  

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Commits on Nov 13, 2015

• added first PROTOTYPE for Euler diagram

  

  pieter

  committed
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Commits on Dec 2, 2015

• volcano plot view using Scatterplots.js

  

  pieter

  authored and

  Sander de Ridder

  committed
  a5c8d9e

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• code now using only Scatterplots.js

  

  pieter

  authored and

  Sander de Ridder

  committed
  a08a02e

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• added the option to add a volcano plot representation of the data.

  

  pieter

  authored and

  Sander de Ridder

  committed
  3078816

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• removed field cytoband to free up some space in the UI

  

  pieter

  authored and

  Sander de Ridder

  committed
  0a08e42

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• made drawCoExpInfo optional

  

  pieter

  authored and

  Sander de Ridder

  committed
  2c1e062

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• added volcano_plot_view.js

  

  pieter

  authored and

  Sander de Ridder

  committed
  0c2874a

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• sending original json data to callback function

  

  pieter

  authored and

  Sander de Ridder

  committed
  83cb642

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• small fixes and enhancements; further integrated plot with datatable to

  Show description for 5136e76
  

  pieter

  authored and

  Sander de Ridder

  committed
  5136e76

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• implemented scatterPlotBrushCallBack and special selection cases

  

  pieter

  authored and

  Sander de Ridder

  committed
  50e80ef

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• implemented special selection cases, added support for optional

  Show description for 1e3e978
  

  pieter

  authored and

  Sander de Ridder

  committed
  1e3e978

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• added ScatterPlots.js

  

  pieter

  authored and

  Sander de Ridder

  committed
  6358f9c

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• increased width of gene column

  

  pieter

  authored and

  Sander de Ridder

  committed
  9f72196

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• renamed method

  

  pieter

  authored and

  Sander de Ridder

  committed
  6c79503

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• added correct formatting for qtip

  

  pieter

  authored and

  Sander de Ridder

  committed
  fcd90d9

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• added documentation to new methods

  

  pieter

  authored and

  Sander de Ridder

  committed
  5838be4

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• added comments; removed unnecessary code

  

  pieter

  authored and

  Sander de Ridder

  committed
  fe7f9d5

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• updated code, removed unnecessary parts

  

  pieter

  authored and

  Sander de Ridder

  committed
  709fa33

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• small documentation improvement

  

  pieter

  authored and

  Sander de Ridder

  committed
  c306280

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• improved comments

  

  pieter

  authored and

  Sander de Ridder

  committed
  170301a

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• code clean-up

  

  pieter

  authored and

  Sander de Ridder

  committed
  d2f7c6b

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• added first PROTOTYPE for Euler diagram

  

  pieter

  authored and

  Sander de Ridder

  committed
  d94232d

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• added code for a horizontal stacked histogram

  

  Sander de Ridder

  committed
  a2d7dc5

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• added additional comments and code cleanup

  

  Sander de Ridder

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  da0d806

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• Merge remote-tracking branch 'origin/volcano_plot_part1' into volcano_plot_part2

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  Sander de Ridder

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• Removed the venn diagram and updated some variable names which were still suggesting venn

  

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Commits on Dec 15, 2015

• Updating the mini-onco functionality and added the possibility to add labels and lines to scatterplot

  

  Sander de Ridder

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Commits on Dec 16, 2015

• label name change suggested by Nikki, gene column width change, change to prevent column jumpy behaviour on mouseover

  

  Sander de Ridder

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Commits on Dec 24, 2015

• Created new scatterplot based on plotly

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• added plotly

  

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Commits on Jan 4, 2016

• fixed typo

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• Merged

  

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Commits on Jan 6, 2016

• - changed the textual arrows to unicode arrows

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• bugfix for IE

  

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Commits on Jan 7, 2016

• Filtering of table will now only occur when the data in the area changes

  

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Commits on Jan 14, 2016

• Volcano plot also added to other plot tabs

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• Added a container to keep the components together to fix a bug with the positioning of the scatterplot and tables when very few elements were selected (CNA)

  

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• Merge branch 'rc'

  

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• The merged added new functionality to the datatable, which broke the mini-onco. Fixed

  

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Commits on Jan 21, 2016

• mini-onco now immediately visible with a text that suggests a user should select a gene.

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Commits on Jan 25, 2016

• Workaround fix for double-click, which now clears the table filter

  

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• Mini-onco only shown for mutations and copy number

  

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