Merge pull request #8 from bioio-devs/feature/add-bioimage

feature/add bioimage

Author: SeanLeRoy

.gitignore

@@ -50,6 +50,9 @@ coverage.xml
 .hypothesis/
 .pytest_cache/
 
+# Unit test files
+bioio/tests/resources/
+
 # Translations
 *.mo
 *.pot

CONTRIBUTING.md

@@ -25,7 +25,7 @@ Ready to contribute? Here's how to set up `bioio` for local development.
 
     ```bash
     cd bioio/
-    just install
+    just setup-dev
     ```
 
 4. Create a branch for local development:

Justfile

@@ -37,6 +37,12 @@ build:
 	just lint
 	just test
 
+# install dependencies, setup pre-commit, download test resources
+setup-dev:
+	just install
+	pre-commit install
+	python scripts/download_test_resources.py
+
 # generate Sphinx HTML documentation
 generate-docs:
 	rm -f docs/bioio*.rst

bioio/__init__.py

@@ -4,10 +4,16 @@
 
 from importlib.metadata import PackageNotFoundError, version
 
+from .bio_image import BioImage
+
 try:
     __version__ = version("bioio")
 except PackageNotFoundError:
     __version__ = "uninstalled"
 
 __author__ = "Eva Maxfield Brown, Dan Toloudis, BioIO Contributors"
 __email__ = "evamaxfieldbrown@gmail.com, danielt@alleninstitute.org"
+
+__all__ = [
+    "BioImage",
+]