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fix: bump time of ngs_mapping/bam_collect_doc #394

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merged 2 commits into from
Jul 17, 2023
Merged

fix: bump time of ngs_mapping/bam_collect_doc #394

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621c0ac
fix: bump time of ngs_mapping/bam_collect_doc
holtgrewe Jun 1, 2023
2550827
fix test
holtgrewe Jul 17, 2023
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2 changes: 1 addition & 1 deletion snappy_pipeline/workflows/ngs_mapping/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1147,7 +1147,7 @@ def get_resource_usage(self, action):
self._check_action(action)
return ResourceUsage(
threads=1,
time="04:00:00",
time="24:00:00",
memory="2G",
)

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2 changes: 1 addition & 1 deletion tests/snappy_pipeline/workflows/test_workflows_ngs_mapping.py
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Expand Up @@ -679,7 +679,7 @@ def test_generate_doc_files_step_part_run_get_log_file(ngs_mapping_workflow):

def test_generate_doc_files_step_part_get_resource(ngs_mapping_workflow):
"""Tests BamCollectDocStepPart.get_resource()"""
expected_dict = {"threads": 1, "time": "04:00:00", "memory": "2G", "partition": "medium"}
expected_dict = {"threads": 1, "time": "24:00:00", "memory": "2G", "partition": "medium"}
for resource, expected in expected_dict.items():
actual = ngs_mapping_workflow.get_resource("bam_collect_doc", "run", resource)
assert actual == expected
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