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Preserve
.git
suffixes and casing in Git dependencies (#2789)
## Summary I noticed in #2769 that I was now stripping `.git` suffixes from Git URLs after resolving to a precise commit. This PR cleans up the internal caching to use a better canonical representation: a `RepositoryUrl` along with a `GitReference`, instead of a `GitUrl` which can contain non-canonical data. This gives us both better fidelity (preserving the `.git`, along with any casing that the user provided when defining the URL) and is overall cleaner and more robust.
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