Apply combination logic to merge CLI and persistent configuration #6527

Job	Run time
Determine changes	4s
cargo clippy \| ubuntu	55s
cargo shear	25s
cargo fmt	25s
cargo test \| windows	5m 56s
cargo test \| ubuntu	4m 18s
cargo test \| macos	5m 9s
build binary \| linux	1m 9s
build binary \| macos aarch64	1m 15s
build binary \| macos x86_64	1m 56s
check windows trampoline	2m 42s
build binary \| windows	1m 40s
cargo clippy \| windows	1m 2s
benchmarks	2m 0s
check system \| python on debian	44s
ecosystem test \| prefecthq/prefect	1m 55s
ecosystem test \| pallets/flask	11s
check system \| python on fedora	38s
check system \| python on opensuse	38s
check system \| python on ubuntu	22s
check cache \| ubuntu	1m 1s
check system \| alpine	40s
check system \| python via pyenv	1m 49s
check system \| amazonlinux	25s
check system \| pypy on ubuntu	23s
check system \| pyston	3m 47s
check system \| python on rocky linux 8	42s
check system \| python on rocky linux 9	29s
check system \| homebrew python on macos aarch64	19s
check cache \| macos aarch64	12s
check system \| python on macos aarch64	14s
check system \| python3.13 on windows	1m 19s
check system \| python3.12 via chocolatey	1m 53s
check system \| conda3.8 on linux	43s
check system \| embedded python3.10 on windows	41s
check system \| conda3.11 on linux	36s
check system \| conda3.8 on windows	2m 6s
check system \| python3.10 on windows	53s
check system \| conda3.11 on windows	2m 19s
check system \| python3.10 on windows x86	1m 1s
check system \| conda3.8 on macos	1m 41s
check system \| conda3.11 on macos	52s
check system \| python on macos x86_64	23s
	57m 52s

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