Restore makeNewPops and fix ParseAlleleCount, major doc upgrade
#247
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* add supporting unit test * fix bug in handling non-allele metadata columns in `StringMatrix` * fix `dump()` function in `StringMatrix` and add associated unit test * ensure all metadata and header lines get copied when creating new Sequence matrices
* note that `[Arlequin]` functionality is deprecated since 1.0.0
* more deprecated flags
* rename `Sequence` unit tests to not use `AnthonyNolan` in directory names unless explicitly used in the Filters
* not fully ported to Python 3 * handle empty extra and header columns in `StringMatrix` better * add unit test based on examples in `data/samples`
alexlancaster
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makeNewPops and ParseAlleleCountmakeNewPops and fix ParseAlleleCount, major doc upgrade (#247)
alexlancaster
changed the title
makeNewPops and fix ParseAlleleCount, major doc upgrade (#247)makeNewPops and fix ParseAlleleCount, major doc upgrade
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Update to Python 3 and restore
makeNewPopsandParseAlleleCountfunctionalityAdd new unit tests
Relocate files into unit test area, remove some obsolete files
Major documentation updates for filtering sections and formats