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Ex Center for Algorithmic Biotechnology

Overview
Repositories 30
Projects 1
Packages
People 6

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spades Public

SPAdes Genome Assembler

C++ 842 150
quast Public

Genome assembly evaluation tool

AMPL 441 86

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Showing 10 of 30 repositories

IsoQuant Public
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Python 167 15 31 3 Updated Jun 19, 2025
rnaquast Public
Quality assessment of de novo transcriptome assemblies from RNA-Seq data

Python 22 6 8 0 Updated Jun 6, 2025
spades Public
SPAdes Genome Assembler

C++ 842 150 266 3 Updated May 13, 2025
nerpa Public

C++ 16 4 0 3 Updated Mar 20, 2025
quast-website Public
Django web interface for Quast assembly assessment tool: https://github.com/ablab/quast

HTML 6 2 0 0 Updated Nov 14, 2024
quast Public
Genome assembly evaluation tool

AMPL 441 86 80 4 Updated Nov 14, 2024
metarna Public

Python 0 0 0 2 Updated Jul 6, 2023
orf-search Public
ORF search on assembly graphs

Python 7 4 0 0 Updated Apr 12, 2023
metaGT Public
Pipeline for metagenome and metatranscriptome joint assembly

Nextflow 21 MIT 2 2 0 Updated Mar 3, 2023
VerityMap Public

C++ 35 GPL-3.0 5 10 1 Updated Feb 22, 2023

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Python C++ Shell Java Nextflow

Most used topics

bioinformatics transcriptome-assembly

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