Skip to content
@UCSC-Treehouse

UCSC Treehouse Childhood Cancer Initiative

Popular repositories Loading

  1. mend_qc mend_qc Public

    Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file

    R 4

  2. pipelines pipelines Public

    Makefiles to run dockerized pipelines used in Treehouse on a single sample

    Makefile 3 6

  3. b2f_docker b2f_docker Public

    C++ 2

  4. CARE CARE Public

    Treehouse Comparative Analysis of RNA Expression

    Jupyter Notebook 2

  5. fusion-for-core fusion-for-core Public

    UCSC Treehouse Gene Fusion Analysis Pipeline

    Python 1 9

  6. hub hub Public

    Tooling to spin up and manage jupyter, nbviewer, xena for tertiary analyis

    Python 1 1

Repositories

Showing 10 of 51 repositories
  • authorship_block_for_manuscripts Public

    This code generates the authorship block typical for scientific manuscripts, listing all authors with numeric affiliation codes

    UCSC-Treehouse/authorship_block_for_manuscripts’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 2, 2025
  • CARE Public

    Treehouse Comparative Analysis of RNA Expression

    UCSC-Treehouse/CARE’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 3 3 Updated Apr 1, 2025
  • multi-compendia-mapping Public Forked from sdadhwa/multi-compendia-mapping
    UCSC-Treehouse/multi-compendia-mapping’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Mar 16, 2025
  • compendium-expression-matrix Public
    UCSC-Treehouse/compendium-expression-matrix’s past year of commit activity
    Python 0 0 0 0 Updated Mar 7, 2025
  • HCB_lab_notebook Public
    UCSC-Treehouse/HCB_lab_notebook’s past year of commit activity
    0 0 0 0 Updated Feb 18, 2025
  • CARE_IMPACT_analysis_for_manuscript Public

    Work supporting the manuscript submission effort underway July 2023

    UCSC-Treehouse/CARE_IMPACT_analysis_for_manuscript’s past year of commit activity
    HTML 0 0 5 0 Updated Jan 27, 2025
  • mend_qc Public

    Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file

    UCSC-Treehouse/mend_qc’s past year of commit activity
    R 4 MIT 0 1 2 Updated Jan 13, 2025
  • shell-novice2 Public
    UCSC-Treehouse/shell-novice2’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 9, 2025
  • shell-novice Public
    UCSC-Treehouse/shell-novice’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 8, 2025
  • brca-exchange Public Forked from BRCAChallenge/brca-exchange

    Overall management and deployment of the BRCA Exchange web portal and pipeline scripts

    UCSC-Treehouse/brca-exchange’s past year of commit activity
    Python 0 33 0 0 Updated Sep 16, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…