Causality Analysis for Parent-Child Trios

Reproducible data analysis for "Inferring causal genotype-phenotype relationships for population-sampled parent-child trios" by Tang, Cabreros, and Storey

Provenance for this README

• File name: README.md
• Author: Yushi Tang, Irineo Cabreros and John D. Storey
• Date created: 2024-11-20
• Date modified: 2024-11-20

Reproducible Analysis

We would suggest to clone the whole repository into local before checking/reviewing the following documents.

• Source: https://github.com/StoreyLab/causal-trio/blob/main/causaltrio-reproducible-analysis.Rmd
• Output: https://github.com/StoreyLab/causal-trio/blob/main/causaltrio-reproducible-analysis.html

Manuscript

• Working draft: https://github.com/StoreyLab/causal-trio/tree/main/manuscript/causaltrio-manuscript.pdf
• Working LaTeX: https://github.com/StoreyLab/causal-trio/tree/main/manuscript/causaltrio-manuscript.tex

Main Software

geneticTMT (Version 0.1.0): https://github.com/StoreyLab/geneticTMT

Forum and Open Discussion

• Q & A: TBD

Main Data and File Overview

Table of Contents

• README.md 2 KB
• causaltrio-reproducible-analysis.Rmd 186 KB
• causaltrio-reproducible-analysis.html 15.8 MB
• LICENCE 1 KB
• ./data/dtdt/* 72 KB
• ./data/dtmt/* 2.4 MB
• ./data/linkage/* 9.7 MB
• ./data/pop_structure/* 2.5 MB
• ./data/tmt_lmm_slr/* 132.2 MB
• ./data/vdtmt/* 814 KB

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END OF README