Name	Name	Last commit message	Last commit date
Latest commit RachelMurray-Watson git May 7, 2024 4435c1b · May 7, 2024 History 629 Commits
Best_models_123_classifier	Best_models_123_classifier	Tidied	Sep 28, 2023
Graphs	Graphs	Tidied both generalizability and latest data	Apr 1, 2024
__pycache__	__pycache__	Updated the net benefit file to compare the	Jan 29, 2024
Alabama.csv	Alabama.csv	Edited to streamline	Jan 19, 2024
Bootstrapping.ipynb	Bootstrapping.ipynb	More troubleshooting	Sep 14, 2023
CDC Comparison.docx	CDC Comparison.docx	Pruned the large decision tree model	Aug 3, 2023
CDC_A_smaller_hyperparametersexact_1.sav	CDC_A_smaller_hyperparametersexact_1.sav	Edited graphs	Jan 16, 2024
CDC_A_smaller_hyperparametersexact_5.sav	CDC_A_smaller_hyperparametersexact_5.sav	Edited graphs	Jan 16, 2024
CDC_Classifier_Period.ipynb	CDC_Classifier_Period.ipynb	fixing for 2022 period	Apr 23, 2024
CDC_classifier_auroc_0.7234_CDC_period_naive.sav	CDC_classifier_auroc_0.7234_CDC_period_naive.sav	git	Apr 22, 2024
CDC_classifier_auroc_0.7983_CDC_period_B.sav	CDC_classifier_auroc_0.7983_CDC_period_B.sav	git	Apr 22, 2024
CDC_classifier_auroc_0.8155_CDC_period.sav	CDC_classifier_auroc_0.8155_CDC_period.sav	git	Dec 6, 2023
CDC_classifier_auroc_0.8163_CDC_period_B.sav	CDC_classifier_auroc_0.8163_CDC_period_B.sav	New function for merge	Dec 7, 2023
CDC_classifier_auroc_0.8208_CDC_period_B.sav	CDC_classifier_auroc_0.8208_CDC_period_B.sav	Calculated MR for the CDC classifiers	Oct 6, 2023
CDC_classifier_auroc_0.8234_CDC_period_B.sav	CDC_classifier_auroc_0.8234_CDC_period_B.sav	Ensures that the CDC B is correct	Dec 7, 2023
CDC_classifier_auroc_0.8856_CDC_period_full.sav	CDC_classifier_auroc_0.8856_CDC_period_full.sav	Performance of full classifier drops hugely...	Dec 7, 2023
CDC_classifier_auroc_0.8872_CDC_period_full.sav	CDC_classifier_auroc_0.8872_CDC_period_full.sav	Redid full classifier to ensure it was trained	Dec 7, 2023
CDC_classifier_auroc_0.9044_CDC_period_reduced.sav	CDC_classifier_auroc_0.9044_CDC_period_reduced.sav	Added reduced model	Jan 31, 2024
CDC_classifier_auroc_0.9091_CDC_period_full.sav	CDC_classifier_auroc_0.9091_CDC_period_full.sav	tidied	Oct 5, 2023
CDC_comparison.ipynb	CDC_comparison.ipynb	git	Dec 6, 2023
CDC_period_classifier_A_B.png	CDC_period_classifier_A_B.png	Changed classifiers for the CDC period	Dec 11, 2023
COVID_19_Forecast_dataset.ipynb	COVID_19_Forecast_dataset.ipynb	Optimizing classifiers	Aug 2, 2023
County_level_hospitalizations_death_by_county.csv	County_level_hospitalizations_death_by_county.csv	Added the beds data	Jul 10, 2023
County_level_hospitalizations_death_by_county_all_dates.csv	County_level_hospitalizations_death_by_county_all_dates.csv	Extended analysis to all 130 weeks	Jul 17, 2023
Data_exploration_COVID.ipynb	Data_exploration_COVID.ipynb	git	Jul 28, 2023
Expanding_model_four_week_deliver.ipynb	Expanding_model_four_week_deliver.ipynb	changed plotting so it showed for outcomes weeks,	Apr 23, 2024
Expanding_training_set.ipynb	Expanding_training_set.ipynb	git	May 7, 2024
Full_model_period_180.sav	Full_model_period_180.sav	Added new file to add to github to make the data suitable for use by …	Nov 2, 2023
Full_model_period_195.sav	Full_model_period_195.sav	added end steps to preparing data	Nov 2, 2023
Functions.py	Functions.py	Fixed up graphs	Jan 26, 2024
Generalizability_by_HSA.ipynb	Generalizability_by_HSA.ipynb	git	Apr 22, 2024
HSA_classifier.ipynb	HSA_classifier.ipynb	git	Sep 14, 2023
Hospitalization_threshold_analysis.ipynb	Hospitalization_threshold_analysis.ipynb	changed plotting so it showed for outcomes weeks, not the prediction	Apr 23, 2024
Maximum_regret.ipynb	Maximum_regret.ipynb	Added saving of other	Jan 16, 2024
Naive_classifier.ipynb	Naive_classifier.ipynb	Git	Jan 22, 2024
Net_benefit_calculation_optimal_threshold.ipynb	Net_benefit_calculation_optimal_threshold.ipynb	git	Apr 22, 2024
Optimized_CDC_Classifier.ipynb	Optimized_CDC_Classifier.ipynb	git	Aug 31, 2023
Outcome_period_analysis.ipynb	Outcome_period_analysis.ipynb	changed plotting so it showed for outcomes weeks, not the prediction …	Apr 23, 2024
Plots_of_data.ipynb	Plots_of_data.ipynb	git	Apr 22, 2024
Plotting_auROC.ipynb	Plotting_auROC.ipynb	git	Sep 13, 2023
Plotting_maps.ipynb	Plotting_maps.ipynb	Edited to streamline	Jan 19, 2024
Prep_dataset.ipynb	Prep_dataset.ipynb	Git	Dec 7, 2023
README.md	README.md	Initial commit	Jun 21, 2023
SHAP_Values.ipynb	SHAP_Values.ipynb	updated for smaller hyperparameters	Jan 16, 2024
Sample_shifted_script_for_cluster.ipynb	Sample_shifted_script_for_cluster.ipynb	Did second week	Dec 6, 2023
Sensitivity_analysis_no_case_data.ipynb	Sensitivity_analysis_no_case_data.ipynb	git	Dec 11, 2023
Sensitivity_different_training_sets.ipynb	Sensitivity_different_training_sets.ipynb	changed plotting so it showed for outcomes weeks, not the prediction	Apr 23, 2024
Simplified_decision_tree_graphs.ipynb	Simplified_decision_tree_graphs.ipynb	Tidied both generalizability and latest data	Apr 1, 2024
State_hospitalizations_new_weekly.csv	State_hospitalizations_new_weekly.csv	Converted the data from	Jun 26, 2023
State_hospitalizations_total_hospitalizations_first_six_months_healthdatagov.csv	State_hospitalizations_total_hospitalizations_first_six_months_healthdatagov.csv	Converted the data from	Jun 26, 2023
State_hospitalizations_trimmed_first_six_months_healthdatagov.csv	State_hospitalizations_trimmed_first_six_months_healthdatagov.csv	Added in change in hospitalization as a feature	Jun 23, 2023
Test_ccp_vs_parameter_tuning.ipynb	Test_ccp_vs_parameter_tuning.ipynb	Dummy test	Jan 16, 2024
Training_script_replica_of_cluser.ipynb	Training_script_replica_of_cluser.ipynb	saved auroc and hsas	Jan 29, 2024
Using_latest_data.ipynb	Using_latest_data.ipynb	git	Apr 22, 2024
all_state_weekly_data_cases_deaths_admissions_hospital.csv	all_state_weekly_data_cases_deaths_admissions_hospital.csv	Fixed admissions	Jun 30, 2023
graph_0.png	graph_0.png	Changed classifiers for the CDC period	Dec 11, 2023
graph_1.png	graph_1.png	Changed classifiers for the CDC period	Dec 11, 2023
hsa_time_data.csv	hsa_time_data.csv	Add files via upload	Aug 1, 2023
hsa_time_data_all_dates_CDC_features_only.csv	hsa_time_data_all_dates_CDC_features_only.csv	Included Nas	Dec 5, 2023
hsa_time_data_all_dates_CDC_features_only_incl_NA.csv	hsa_time_data_all_dates_CDC_features_only_incl_NA.csv	Included NAs and ccases etc	Dec 6, 2023
hsa_time_data_all_dates_weekly.csv	hsa_time_data_all_dates_weekly.csv	Add files via upload	Sep 15, 2023

Name

Last commit message

Last commit date