Minor bug fixes before 2.1.2 release

dendrify/neuronmodel.py

@@ -238,6 +238,9 @@ def _set_properties(self, cm=None, gl=None, r_axial=None, v_rest=None,
             # update all other params if provided
             if not comp.dimensionless and any(params.values()):
                 for param, value in params.items():
+                    # omit spine_factor for Soma
+                    if param == 'spine_factor' and isinstance(comp, Soma):
+                        continue
                     if value:
                         setattr(comp._ephys_object, param, value)
                     # make sure to initialize area factors if not provided
@@ -391,7 +394,8 @@ def make_neurongroup(self,
             try:
                 ap_reset = Synapses(group, group,
                                     on_pre=second_reset,
-                                    delay=spike_width)
+                                    delay=spike_width,
+                                    namespace=self.parameters)
                 ap_reset.connect(j='i')
 
             except Exception:

docs_sphinx/source/changelog.rst

@@ -1,6 +1,12 @@
 Release notes
 =============
 
+Version 2.1.2
+-------------
+    * Fixed a bug that could cause the wrong estimation of a somatic
+      compartment's surface area.
+    * Other minor improvements.
+
 Version 2.1.1
 -------------
     * A minor release to fix some bugs introduced by VS code auto-formatting. 

docs_sphinx/source/conf.py

@@ -13,7 +13,7 @@
 project = 'Dendrify'
 copyright = '2024, Michalis Pagkalos'
 author = 'Michalis Pagkalos'
-release = '2.1.1'
+release = '2.1.2'
 
 
 # -- General configuration -----------------------------------------------------

setup.py

@@ -1,6 +1,6 @@
 from setuptools import find_packages, setup
 
-VERSION = '2.1.1'
+VERSION = '2.1.2'
 DESCRIPTION = 'A package for adding dendrites to SNNs'
 with open("README.rst") as f:
     LONG_DESCRIPTION = f.read()