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Add Zenodo DOI to the Readme
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alchemistmatt committed Jan 21, 2025
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# PlexedPiper

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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.14708767.svg)](https://doi.org/10.5281/zenodo.14708767)
[![R-CMD-check](https://github.com/PNNL-Comp-Mass-Spec/PlexedPiper/workflows/R-CMD-check/badge.svg)](https://github.com/PNNL-Comp-Mass-Spec/PlexedPiper/actions)
[![R-CMD-check](https://github.com/PNNL-Comp-Mass-Spec/PlexedPiper/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/PNNL-Comp-Mass-Spec/PlexedPiper/actions/workflows/R-CMD-check.yaml)
<!-- badges: end -->
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### Example Data

A companion R package with test data based on the MoTrPAC pilot study is available
here

in the PlexedPiperTestData GitHub repository:
* [PlexedPiperTestData](https://github.com/vladpetyuk/PlexedPiperTestData)

## Docker/Linux installation

PlexedPiper can be run within a [Docker Container](https://www.docker.com/resources/what-container)
PlexedPiper can be run within a [Docker Container](https://www.docker.com/resources/what-container/)

* This example `Dockerfile` shows the required system libraries, starting with the base [rocker/TidyVerse](https://hub.docker.com/r/rocker/tidyverse/dockerfile) image

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### Installation Tips

If within PNNL network there may be an error associated with `mount_smbfs`. This happens due to network access credentials. Options are either to wait or proactively access one of the PNNL servers. For example try mounting one of the public directories from the terminal window. Enter your network password once requested.
If within PNNL network there may be an error associated with `mount_smbfs`. This happens due to network access credentials. Options are either to wait or proactively access one of the PNNL servers. For example try mounting one of the public directories from the terminal window. Enter your network password once requested.
`mount -t smbfs //protoapps/DataPkgs/Public/ ~/temp_msms_results`
Then compilation of the vignettes that imply access to PNNL DMS should proceed smoothly.


Original Location
====
The original location is on the [vladpetyuk](https://github.com/vladpetyuk) account, repo [PlexedPiper](https://github.com/vladpetyuk/PlexedPiper).

## Previous Location

The previous location for PlexedPiper is on the [vladpetyuk](https://github.com/vladpetyuk) account, repo [PlexedPiper](https://github.com/vladpetyuk/PlexedPiper).

## Citation Guidance

1. Petyuk, V. (2025). PlexedPiper. Zenodo. https://doi.org/10.5281/zenodo.14708767

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