MSnID

MSnID is an R/Bioconductor package that provides convenient tools for handling and filtering of MS/MS identification results. The official page is the Bioconductor landing page (release or devel versions). The github page is for sharing, testing, issue tracking and forking/pulling purposes.

R Installation and Usage

# Option 1: Installing from Bioconductor
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MSnID")

# Option 2: Installing from GitHub
if (!require("remotes", quietly = TRUE)) 
    install.packages("remotes")
remotes::install_github("PNNL-Comp-Mass-Spec/MSnID@pnnl-master")

# Usage
library(MSnID)

By default, install_github does not build vignettes. Specify build_vignettes = TRUE.

Original Location

The original location is on the vladpetyuk account, repo MSnID.