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PGScatalog / pygscatalog Public

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Fix problems with ancestry aggregation & scaling on biobank-data#19

Merged

nebfield merged 13 commits intomainPGScatalog/pygscatalog:mainfrom devPGScatalog/pygscatalog:devCopy head branch name to clipboard

Jun 12, 2024

Conversation Commits13 (13)Checks Files changed

Commits

Commits on May 26, 2024

Don't perform ancestry adjustments/keep AVG columns.
smlmbrt
committed
Edit expected column list
smlmbrt
committed
Bump versions (calc=0.2.0;utils=1.1.0)
smlmbrt
committed

Commits on Jun 5, 2024

simplify polygenicscore class (remove batches until we run into problems)
nebfield
committed
Fix pgscatalog.match performance regression (#22 )
nebfield
authored
fix pyproject
nebfield
committed
update dockerfile
nebfield
committed

Commits on Jun 7, 2024

fix exception handling when one score fails matching
nebfield
committed
fix merging scoring files with different column sets
nebfield
committed

Commits on Jun 12, 2024

set pgscatalog package logging levels to INFO
nebfield
committed
Improve aggregation (#23 )
nebfield
authored
bump minor version of pgscatalog.core
nebfield
committed
minor version bump pgscatalog.match
nebfield
committed

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