Run pytest and mypy #5

	name: Run pytest

	on:
	workflow_call:
	inputs:
	python-version:
	type: string
	required: false
	default: "3.11"
	package-directory:
	type: string
	required: true
	workflow_dispatch:
	inputs:
	package-directory:
	required: true
	type: choice
	options:
	- pgscatalog.corelib
	- pgscatalog.matchlib
	- pgscatalog.calclib
	- pgscatalog.downloadapp
	- pgscatalog.combineapp
	- pgscatalog.matchapp
	- pgscatalog.calcapp
	python-version:
	required: false
	default: '3.11'
	type: string


	jobs:
	pytest:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Install Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ inputs.python-version }}
	cache: 'pip'

	- uses: actions/cache@v4
	with:
	path: ${{ inputs.package-directory }}/.venv
	key: venv-${{ hashFiles('**/poetry.lock') }}

	- run: pip install poetry

	- run: poetry install --with dev --all-extras
	working-directory: ${{ inputs.package-directory }}

	- run: poetry run pytest --cov --cov-report xml
	working-directory: ${{ inputs.package-directory }}

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v4.0.1
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	slug: PGScatalog/pygscatalog
	flags: ${{ inputs.package-directory }}

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