To update dycore to the GFDL dev/emc (the FV3 202101 version ) (ufs-c…

…ommunity#262)

Use the GFDL dycore repository dev/emc.
The GFDL dev/emc branch of dycore was synchronized with the GFDL master, which included the FV3 202101 upgrade except inline GFDL_MP :
https://github.com/NOAA-GFDL/GFDL_atmos_cubed_sphere/releases/tag/FV3-202101-public

.gitmodules

@@ -1,6 +1,6 @@
 [submodule "atmos_cubed_sphere"]
 	path = atmos_cubed_sphere
-	url = https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere
+	url = https://github.com/NOAA-GFDL/GFDL_atmos_cubed_sphere
 	branch = dev/emc
 [submodule "ccpp/framework"]
 	path = ccpp/framework

CMakeLists.txt

@@ -47,8 +47,12 @@ list(APPEND _fv3dycore_srcs
   atmos_cubed_sphere/model/tp_core.F90
   atmos_cubed_sphere/model/nh_core.F90
   atmos_cubed_sphere/model/nh_utils.F90
+  atmos_cubed_sphere/tools/coarse_grained_diagnostics.F90
+  atmos_cubed_sphere/tools/coarse_grained_restart_files.F90
+  atmos_cubed_sphere/tools/coarse_graining.F90
   atmos_cubed_sphere/tools/external_ic.F90
   atmos_cubed_sphere/tools/external_sst.F90
+  atmos_cubed_sphere/tools/fv_diag_column.F90
   atmos_cubed_sphere/tools/fv_diagnostics.F90
   atmos_cubed_sphere/tools/fv_eta.F90
   atmos_cubed_sphere/tools/fv_grid_tools.F90
@@ -103,7 +107,8 @@ set_target_properties(fv3dycore PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURR
 
 target_compile_definitions(fv3dycore PRIVATE "${_fv3dycore_defs_private}")
 target_include_directories(fv3dycore PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/atmos_cubed_sphere
-                                             ${CMAKE_CURRENT_BINARY_DIR}/ccpp/driver/mod)
+                                              ${CMAKE_CURRENT_SOURCE_DIR}/atmos_cubed_sphere/tools
+                                              ${CMAKE_CURRENT_BINARY_DIR}/ccpp/driver/mod)
 target_include_directories(fv3dycore INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
                                                $<INSTALL_INTERFACE:mod>)