Remove the eomg job #3331

DavidGrumm-NOAA · 2025-02-14T19:22:42Z

Description

The eomg job is no longer supported for the GSI and the GDASApp has its own jobs to handle observational diagnostics (i.e. when lobsdiag=".true."): atmensanlobs and atmensanlsol. Thus, the eomg job will be removed from the global workflow without affecting the new atmensanlobs and atmensanlsol jobs.

This PR resolves issue #2525.

Type of change

Bug fix (fixes something broken)
New feature (adds functionality)
Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

Is this a breaking change (a change in existing functionality)? NO
Does this change require a documentation update? NO
Does this change require an update to any of the following submodules? YES/NO (If YES, please add a link to any PRs that are pending.)
- [NO] EMC verif-global
- [NO] GDAS
- [NO] GFS-utils
- [NO] GSI
- [NO] GSI-monitor
- [NO] GSI-utils
- [NO] UFS-utils
- [NO] UFS-weather-model
- [NO] wxflow

How has this been tested?

Checklist

Any dependent changes have been merged and published
[X ] My code follows the style guidelines of this project
I have performed a self-review of my own code
I have commented my code, particularly in hard-to-understand areas
I have documented my code, including function, input, and output descriptions
My changes generate no new warnings
New and existing tests pass with my changes
This change is covered by an existing CI test or a new one has been added
Any new scripts have been added to the .github/CODEOWNERS file with owners
I have made corresponding changes to the system documentation if necessary

DavidGrumm-NOAA · 2025-02-18T19:21:36Z

@WalterKolczynski-NOAA @DavidHuber-NOAA @aerorahul : this PR is ready for review. There are some differences between the baseline output and the updated code output, which is unexpected. @DavidHuber-NOAA has suggested we go ahead with this PR and then rerun the test once approvals are made.

DavidHuber-NOAA

In addition to the comments, there are some additional places where eomg needs to be removed. Specifically:

parm/config/gfs/config.resources*
parm/config/gfs/config.eobs (this config was used by eomg and there are a couple of eomg-specific variables)
parm/archive/enkf.yaml.j2

Also, there is still a mention of eomg in gfs_tasks.py (under the eupd method).

workflow/applications/gfs_cycled.py

DavidHuber-NOAA · 2025-02-18T20:03:36Z

Also, there are some checks for lobsdiag_forenkf in the following files that should be checked. If these checks are for JEDI-based analyses, then they're fine, otherwise the code should be simplified to remove the contents inside of the lobsdiag_forenkf logical blocks. Just a reminder, eomg used to be triggered when lobsdiag_forenkf = .false.

parm/archive/enkf_restarta_grp.yaml.j2
parm/archive/enkf_grp.yaml.j2
parm/config/gfs/config.anal
scripts/exgdas_enkf_update.sh
scripts/exglobal_atmos_analysis.sh

DavidHuber-NOAA · 2025-02-18T20:39:11Z

@DavidGrumm-NOAA Per our discussion, please just remove eomg and lobsdiag references from GSI-specific files and not those files that are shared by both the GSI and GDASApp. Specifically, please target these files:

parm/config/gfs/config.anal
scripts/exgdas_enkf_update.sh
scripts/exglobal_atmos_analysis.sh
parm/config/gfs/config.resources
parm/config/gfs/config.resources.HERCULES
parm/config/gfs/config.eobs (this config was used by eomg and there are a couple of eomg-specific variables)

…eomg_1

DavidHuber-NOAA

Overall it looks pretty good. I just have a couple of suggestions on the namelists since we cannot control the default values of lobsdiag_forenkf and one other place in the setup scripts that needs the flag removed.

scripts/exgdas_enkf_update.sh

scripts/exglobal_atmos_analysis.sh

workflow/rocoto/gfs_tasks.py

DavidHuber-NOAA · 2025-03-03T13:30:49Z

scripts/exgdas_enkf_update.sh

-      fi
-   fi
-   mkdir -p "${COMOUT_ATMOS_ANALYSIS_MEM}"
+   mkdir -p "${COM_ATMOS_ANALYSIS_MEM}"


I think this is supposed to be COMOUT_ATMOS_ANALYSIS_MEM.

@DavidGrumm-NOAA It looks like this still needs to be fixed. This caused a failure in the eupd job.

DavidHuber-NOAA

Just one small change remaining. After that, I think CI tests can be started.

DavidHuber-NOAA

Changes look good to me.

emcbot · 2025-03-04T10:36:14Z

Experiment C96C48_hybatmDA FAILED on Hera in Build# 1 with error logs:

Follow link here to view the contents of the above file(s): (link)

emcbot · 2025-03-04T10:36:14Z

Experiment C48mx500_hybAOWCDA FAILED on Hera in Build# 1 with error logs:

/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C48mx500_hybAOWCDA_f5b893c3/logs/2021032500/enkfgdas_eupd.log

Follow link here to view the contents of the above file(s): (link)

emcbot · 2025-03-04T10:36:15Z

Experiment C96C48_hybatmaerosnowDA FAILED on Hera in Build# 1 with error logs:

Follow link here to view the contents of the above file(s): (link)

emcbot · 2025-03-04T10:36:20Z

Experiment C96C48_hybatmDA FAILED on Hera in Build# 1 in
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/EXPDIR/C96C48_hybatmDA_f5b893c3

emcbot · 2025-03-04T10:36:20Z

Experiment C96C48_hybatmaerosnowDA FAILED on Hera in Build# 1 in
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/EXPDIR/C96C48_hybatmaerosnowDA_f5b893c3

emcbot · 2025-03-04T10:36:23Z

Experiment C48mx500_hybAOWCDA FAILED on Hera in Build# 1 in
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/EXPDIR/C48mx500_hybAOWCDA_f5b893c3

emcbot · 2025-03-04T11:00:31Z

Experiment C96_atm3DVar FAILED on Hera in Build# 1 with error logs:

/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C96_atm3DVar_f5b893c3/logs/2021122100/gdas_verfrad.log

Follow link here to view the contents of the above file(s): (link)

emcbot · 2025-03-04T11:00:39Z

Experiment C96_atm3DVar FAILED on Hera in Build# 1 in
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/EXPDIR/C96_atm3DVar_f5b893c3

emcbot · 2025-03-04T11:06:53Z

Experiment C48mx500_3DVarAOWCDA FAILED on Hera in Build# 1 with error logs:

/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C48mx500_3DVarAOWCDA_f5b893c3/logs/2021032500/gdas_verfrad.log

Follow link here to view the contents of the above file(s): (link)

emcbot · 2025-03-04T11:07:01Z

Experiment C48mx500_3DVarAOWCDA FAILED on Hera in Build# 1 in
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/EXPDIR/C48mx500_3DVarAOWCDA_f5b893c3

emcbot · 2025-03-04T11:43:22Z

Experiment C96C48_ufs_hybatmDA FAILED on Hera in Build# 1 with error logs:

/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C96C48_ufs_hybatmDA_f5b893c3/logs/2024022400/enkfgdas_earc_tars_01.log

Follow link here to view the contents of the above file(s): (link)

emcbot · 2025-03-04T11:43:30Z

Experiment C96C48_ufs_hybatmDA FAILED on Hera in Build# 1 in
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/EXPDIR/C96C48_ufs_hybatmDA_f5b893c3

DavidHuber-NOAA · 2025-03-04T12:50:12Z

@DavidGrumm-NOAA In addition to the eupd job failure, it looks like the verfrad job is failing. Can you take a look at the log an try to determine the issue: /scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C48mx500_3DVarAOWCDA_f5b893c3/logs/2021032500/gdas_verfrad.log

emcbot · 2025-03-04T12:56:59Z

CI Failed on Hera in Build# 1
Built and ran in directory /scratch1/NCEPDEV/global/CI/3331


Experiment C96mx100_S2S_f5b893c3 Completed 1 Cycles: *SUCCESS* at Tue Mar  4 10:29:48 UTC 2025
Experiment C48mx500_hybAOWCDA_f5b893c3 Terminated with 0
FAIL
FAIL tasks failed and 1 dead at Tue Mar  4 10:35:57 UTC 2025
Experiment C48mx500_hybAOWCDA_f5b893c3 Terminated: *FAIL*
Error logs:
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C48mx500_hybAOWCDA_f5b893c3/logs/2021032500/enkfgdas_eupd.log
Experiment C96C48_hybatmDA_f5b893c3 Terminated with 0
FAIL
FAIL tasks failed and 1 dead at Tue Mar  4 10:36:00 UTC 2025
Experiment C96C48_hybatmDA_f5b893c3 Terminated: *FAIL*
Experiment C96C48_hybatmaerosnowDA_f5b893c3 Terminated with 0
FAIL
FAIL tasks failed and 1 dead at Tue Mar  4 10:36:02 UTC 2025
Experiment C96C48_hybatmaerosnowDA_f5b893c3 Terminated: *FAIL*
Error logs:
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C96C48_hybatmDA_f5b893c3/logs/2021122100/enkfgdas_eupd.log
Error logs:
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C96C48_hybatmaerosnowDA_f5b893c3/logs/2021122018/enkfgdas_eupd.log
Experiment C48_ATM_f5b893c3 Completed 1 Cycles: *SUCCESS* at Tue Mar  4 11:00:13 UTC 2025
Experiment C96_atm3DVar_f5b893c3 Terminated with 0
FAIL
FAIL tasks failed and 1 dead at Tue Mar  4 11:00:15 UTC 2025
Experiment C96_atm3DVar_f5b893c3 Terminated: *FAIL*
Error logs:
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C96_atm3DVar_f5b893c3/logs/2021122100/gdas_verfrad.log
Experiment C48mx500_3DVarAOWCDA_f5b893c3 Terminated with 0
FAIL
FAIL tasks failed and 1 dead at Tue Mar  4 11:06:35 UTC 2025
Experiment C48mx500_3DVarAOWCDA_f5b893c3 Terminated: *FAIL*
Error logs:
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C48mx500_3DVarAOWCDA_f5b893c3/logs/2021032500/gdas_verfrad.log
Experiment C96C48_ufs_hybatmDA_f5b893c3 Terminated with 0
FAIL
FAIL tasks failed and 1 dead at Tue Mar  4 11:43:09 UTC 2025
Experiment C96C48_ufs_hybatmDA_f5b893c3 Terminated: *FAIL*
Error logs:
/scratch1/NCEPDEV/global/CI/3331/RUNTESTS/COMROOT/C96C48_ufs_hybatmDA_f5b893c3/logs/2024022400/enkfgdas_earc_tars_01.log
Experiment C48_S2SW_f5b893c3 Completed 1 Cycles: *SUCCESS* at Tue Mar  4 12:44:09 UTC 2025
Experiment C48_S2SWA_gefs_f5b893c3 Completed 1 Cycles: *SUCCESS* at Tue Mar  4 12:56:45 UTC 2025

RussTreadon-NOAA · 2025-03-04T15:49:07Z

WCOSS2 g-w CI

Install DavidGrumm-NOAA:eomg_1 at f5b893c on Cactus. Run g-w CI with the following results

/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_ATM_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Mar 04 2025 11:50:45    Mar 04 2025 13:11:08
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_3DVarAOWCDA_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103241800        Done    Mar 04 2025 11:50:47    Mar 04 2025 12:11:06
202103250000      Active    Mar 04 2025 11:50:47             -          
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_hybAOWCDA_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103241800        Done    Mar 04 2025 11:50:49    Mar 04 2025 12:11:10
202103250000      Active    Mar 04 2025 11:50:49             -          
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_S2SWA_gefs_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Mar 04 2025 11:50:52    Mar 04 2025 14:05:57
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_S2SW_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Mar 04 2025 11:50:54    Mar 04 2025 13:21:22
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96_atm3DVar_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201800        Done    Mar 04 2025 11:50:56    Mar 04 2025 12:11:24
202112210000      Active    Mar 04 2025 11:50:56             -          
202112210600      Active    Mar 04 2025 11:50:56             -          
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmaerosnowDA_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201200        Done    Mar 04 2025 11:50:58    Mar 04 2025 12:11:27
202112201800      Active    Mar 04 2025 11:50:58             -          
202112210000      Active    Mar 04 2025 11:50:58             -          
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmDA_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201800        Done    Mar 04 2025 11:51:01    Mar 04 2025 12:11:30
202112210000      Active    Mar 04 2025 11:51:01             -          
202112210600      Active    Mar 04 2025 11:51:01             -          
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_ufs_hybatmDA_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202402231800        Done    Mar 04 2025 11:51:03    Mar 04 2025 12:11:34
202402240000        Done    Mar 04 2025 11:51:03    Mar 04 2025 15:11:02
202402240600        Done    Mar 04 2025 11:51:03    Mar 04 2025 15:16:17
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96mx100_S2S_pr3331
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
199405010000        Done    Mar 04 2025 11:51:05    Mar 04 2025 12:51:29

Several of the DA cases encountered failures

/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_3DVarAOWCDA_pr3331
202103250000           gdas_analdiag                   182318550                DEAD                 -29         2         949.0
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_hybAOWCDA_pr3331
202103250000           gdas_analdiag                   182317558                DEAD                 -29         2         947.0
202103250000           enkfgdas_eupd                   182316062                DEAD                   1         2          18.0
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96_atm3DVar_pr3331
202112210000           gdas_analdiag                   182318598                DEAD                 -29         2         947.0
202112210600               gdas_anal                   182320226                DEAD                   1         2          31.0
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmaerosnowDA_pr3331
202112201800           gdas_analdiag                   182317605                DEAD                 -29         2         920.0
202112201800           enkfgdas_eupd                   182316105                DEAD                   1         2          18.0
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmDA_pr3331
202112210000            gdas_verfrad                   182319663                DEAD                   1         2          69.0
202112210000           enkfgdas_eupd                   182316113                DEAD                   1         2          18.0

DavidHuber-NOAA · 2025-03-07T19:31:59Z

scripts/exglobal_atmos_analysis.sh

-  lobsdiag_forenkf=${lobsdiag_forenkf},
+  lobsdiag_forenkf=.true.,


On inspection, this should be reverted:

Suggested change

lobsdiag_forenkf=${lobsdiag_forenkf},

lobsdiag_forenkf=.true.,

lobsdiag_forenkf=${lobsdiag_forenkf}

DavidHuber-NOAA · 2025-03-07T19:32:27Z

scripts/exglobal_atmos_analysis.sh

@@ -56,7 +56,6 @@ cao_check=${cao_check:-".true."}
 ta2tb=${ta2tb:-".true."}

 # Diagnostic files options
-lobsdiag_forenkf=${lobsdiag_forenkf:-".false."}


Same here:

Suggested change

lobsdiag_forenkf=${lobsdiag_forenkf:-".false."}

lobsdiag_forenkf=${lobsdiag_forenkf:-".false."}

DavidHuber-NOAA · 2025-03-07T19:33:13Z

parm/config/gfs/config.eobs

@@ -24,7 +21,4 @@ fi
 export USE_RADSTAT="NO" # This can be only used when bias correction is non-zero.
 export GENDIAG="YES"    # Diagnostic files must be created for EnKF

-export lobsdiag_forenkf=".true."  # write out jacobians from eobs


Same here as well:

Suggested change

export lobsdiag_forenkf=".true." # write out jacobians from eobs

export lobsdiag_forenkf=".true." # write out jacobians from eobs

# need to specify .true. setting since config.anal sets to .false.

DavidHuber-NOAA · 2025-03-07T19:33:47Z

parm/config/gfs/config.anal

@@ -25,10 +25,6 @@ if [[ ${LEVS} = "128" ]]; then
  export SETUP="gpstop=55,nsig_ext=45,${SETUP:-}"
 fi

-# Set namelist option for LETKF


And lastly here:

Suggested change

# Set namelist option for LETKF

# Set namelist option for LETKF

export lobsdiag_forenkf=".false." # anal does not need to write out jacobians

# set to .true. in config.eobs and config.eupd

First commits for "Remove the eomg job issue NOAA-EMC#2525"

0df74d7

DavidGrumm-NOAA requested review from WalterKolczynski-NOAA, aerorahul and DavidHuber-NOAA as code owners February 14, 2025 19:22

DavidGrumm-NOAA self-assigned this Feb 14, 2025

DavidGrumm-NOAA added 4 commits February 14, 2025 15:10

Merge branch 'develop' into eomg_1

c24048d

Fixed whitespace

ecbdb87

Merge in develop

f4e8441

Merge remote-tracking branch 'origin/develop' into eomg_1

73523e5

DavidHuber-NOAA requested changes Feb 18, 2025

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workflow/applications/gfs_cycled.py Outdated Show resolved Hide resolved

workflow/applications/gfs_cycled.py Outdated Show resolved Hide resolved

DavidHuber-NOAA changed the title ~~Remove the eomg job issue~~ Remove the eomg job Feb 19, 2025

Updates based on reviewer comments

29122b0

DavidGrumm-NOAA requested review from RussTreadon-NOAA, CoryMartin-NOAA and CatherineThomas-NOAA as code owners February 25, 2025 18:37

DavidGrumm-NOAA added 2 commits February 25, 2025 14:35

Merge branch 'develop' into eomg_1

02d3f87

Merge in develop; Merge remote-tracking branch 'origin/develop' into …

c667866

…eomg_1

DavidGrumm-NOAA requested a review from DavidHuber-NOAA February 25, 2025 21:45

DavidHuber-NOAA requested changes Feb 27, 2025

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workflow/rocoto/gfs_tasks.py Outdated Show resolved Hide resolved

Address additional comments

0162dc7

DavidGrumm-NOAA requested a review from DavidHuber-NOAA February 28, 2025 23:28

DavidHuber-NOAA reviewed Mar 3, 2025

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Merge branch 'develop' into eomg_1

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DavidGrumm-NOAA requested a review from DavidHuber-NOAA March 3, 2025 19:21

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Merge branch 'develop' into eomg_1

f5b893c

emcbot added CI-Hera-Failed **Bot use only** CI testing on Hera for this PR has failed and removed CI-Hera-Running **Bot use only** CI testing on Hera for this PR is in-progress labels Mar 4, 2025

emcbot added CI-Hera-Failed **Bot use only** CI testing on Hera for this PR has failed and removed CI-Hera-Failed **Bot use only** CI testing on Hera for this PR has failed labels Mar 4, 2025

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Merge branch 'develop' into eomg_1

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Remove the eomg job #3331

Remove the eomg job #3331

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		lobsdiag_forenkf=${lobsdiag_forenkf},
		lobsdiag_forenkf=.true.,

	lobsdiag_forenkf=${lobsdiag_forenkf},
	lobsdiag_forenkf=.true.,
	lobsdiag_forenkf=${lobsdiag_forenkf}

	lobsdiag_forenkf=${lobsdiag_forenkf:-".false."}
	lobsdiag_forenkf=${lobsdiag_forenkf:-".false."}

Remove the eomg job #3331

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Remove the eomg job #3331

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DavidGrumm-NOAA commented Feb 14, 2025 • edited Loading

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