Use nuopc labels in fv3cap. Refactor ModelAdvance in fv3cap (ufs-community#654)

* Update fv3atm to use NUOPC semantic labels in fv3cap, and refactor ModelAdvance.
* Update NEMS. Removed NEMS grid component (no need to set PE_MEMBER01: in model_configure anymore)
* Cleanup CMakeLists.txt

Author: DusanJovic-NOAA

CMakeLists.txt

@@ -131,7 +131,7 @@ if(INLINE_POST)
 endif()
 
 # See https://github.com/NOAA-EMC/NCEPLIBS-nemsio/pull/22
-target_link_libraries(nemsio::nemsio INTERFACE w3emc::w3emc_d bacio::bacio_4)
+target_link_libraries(nemsio::nemsio INTERFACE w3nco::w3nco_d bacio::bacio_4)
 
 # Configure Python
 find_package(Python 3 REQUIRED COMPONENTS Interpreter)
@@ -217,21 +217,16 @@ endif()
 ###############################################################################
 ### UFS Library [NEMS]
 ###############################################################################
-list(APPEND _nems_srcs NEMS/src/module_NEMS_UTILS.F90
-                       NEMS/src/module_EARTH_GRID_COMP.F90
-                       NEMS/src/module_NEMS_GRID_COMP.F90
+list(APPEND _nems_srcs NEMS/src/module_EARTH_GRID_COMP.F90
                        NEMS/src/module_NEMS_Rusage.F90
                        NEMS/src/nems_c_rusage.c)
 
 add_library(ufs ${_nems_srcs})
 set_target_properties(ufs PROPERTIES Fortran_MODULE_DIRECTORY
                                      ${CMAKE_CURRENT_BINARY_DIR}/mod)
-target_include_directories(ufs PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/NEMS/src)
 target_include_directories(ufs INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
                                          $<INSTALL_INTERFACE:mod>)
 
-list(APPEND _ufs_defs_private ESMF_VERSION_MAJOR=${ESMF_VERSION_MAJOR})
-
 if(JEDI_DRIVER)
   list(APPEND _ufs_defs_private JEDI_DRIVER=ON)
 endif()
@@ -255,11 +250,6 @@ if(STOCH_PHYS)
   list(APPEND _ufs_libs_public stochastic_physics)
 endif()
 
-if(FMS)
-  add_dependencies(ufs fms)
-  list(APPEND _ufs_defs_private FRONT_FMS)
-endif()
-
 if(NEMSdatm)
   add_dependencies(ufs datatm)
   list(APPEND _ufs_defs_private FRONT_NEMS_DATM=datm)
@@ -304,28 +294,7 @@ target_link_libraries(ufs PUBLIC "${_ufs_libs_public}")
 ###############################################################################
 add_executable(ufs_model NEMS/src/MAIN_NEMS.F90)
 add_dependencies(ufs_model ufs)
-
-list(APPEND _ufs_model_defs_private ESMF_VERSION_MAJOR=${ESMF_VERSION_MAJOR})
-
-set_target_properties(ufs_model PROPERTIES Fortran_MODULE_DIRECTORY
-                                           ${CMAKE_CURRENT_BINARY_DIR}/mod)
-
-target_include_directories(ufs_model PRIVATE ${CMAKE_CURRENT_BINARY_DIR}/NEMS/src)
-
-if(WW3)
-  list(APPEND _ufs_model_defs_private FRONT_WW3=WMESMFMD)
-  target_include_directories(ufs_model PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/WW3/model/mod)
-endif()
-
-target_compile_definitions(ufs_model PRIVATE "${_ufs_model_defs_private}")
-
-if(NEMSdatm OR CDEPS)
-  target_link_libraries(ufs_model PUBLIC ufs w3nco::w3nco_d)
-endif()
-
-target_link_libraries(ufs_model PRIVATE ufs
-                                        esmf
-                                        NetCDF::NetCDF_Fortran)
+target_link_libraries(ufs_model ufs esmf w3nco::w3nco_d)
 
 ###############################################################################
 ### Install

FV3

@@ -1,6 +1,4 @@
 print_esmf:              .true.
-total_member:            1
-PE_MEMBER01:             @[TASKS]
 start_year:              @[SYEAR]
 start_month:             @[SMONTH]
 start_day:               @[SDAY]

NEMS

@@ -1,18 +1,15 @@
-total_member:            1
 print_esmf:              .true.
-PE_MEMBER01:             @[TASKS]
 start_year:              @[SYEAR]
 start_month:             @[SMONTH]
 start_day:               @[SDAY]
 start_hour:              @[SHOUR]
 start_minute:            0
 start_second:            0
 nhours_fcst:             @[FHMAX]
-RUN_CONTINUE:            .false.
-ENS_SPS:                 .false.
-calendar:                'julian'
 fhrot:                   @[FHROT]
 
+calendar:                'julian'
+
 dt_atmos:                   @[DT_ATMOS]
 atm_coupling_interval_sec:  @[coupling_interval_fast_sec]
 

tests/RegressionTests_cheyenne.gnu.log

@@ -1,5 +1,4 @@
-total_member:            1
-PE_MEMBER01:             80
+print_esmf:              .false.
 start_year:              2020
 start_month:             08
 start_day:               10
@@ -38,5 +37,3 @@ nfhout:                  3
 nfhmax_hf:               12
 nfhout_hf:               1
 nsout:                   -1
-
-print_esmf:              .false.

tests/RegressionTests_cheyenne.intel.log

@@ -1,5 +1,4 @@
-total_member:            1
-PE_MEMBER01:             24
+print_esmf:              .false.
 start_year:              2019
 start_month:             05
 start_day:               20
@@ -13,7 +12,6 @@ restart_interval:        0
 output_1st_tstep_rst:    .false.
 
 quilting:                .true.
-print_esmf:              .false.
 write_groups:            1
 write_tasks_per_group:   4
 num_files:               2

tests/RegressionTests_gaea.intel.log

@@ -1,18 +1,16 @@
-total_member:            @[ENS_NUM]
 print_esmf:              .true.
-PE_MEMBER01:             @[TASKS]
 start_year:              @[SYEAR]
 start_month:             @[SMONTH]
 start_day:               @[SDAY]
 start_hour:              @[SHOUR]
 start_minute:            0
 start_second:            0
 nhours_fcst:             @[FHMAX]
+fhrot:                   @[FHROT]
 
 dt_atmos:                @[DT_ATMOS]
 calendar:                'julian'
 restart_interval:        @[RESTART_INTERVAL]
-fhrot:                   @[FHROT]
 output_1st_tstep_rst:    .false.
 atm_coupling_interval_sec:      @[coupling_interval_fast_sec]
 

tests/RegressionTests_hera.gnu.log

@@ -1,15 +1,12 @@
 print_esmf:              .true.
-
-total_member:            1
-PE_MEMBER01:             @[TASKS]
-
 start_year:              2018
 start_month:             10
 start_day:               15
 start_hour:              00
 start_minute:            0
 start_second:            0
 nhours_fcst:             24
+
 dt_atmos:                225
 calendar:                'julian'
 restart_interval:        0

tests/RegressionTests_hera.intel.log

@@ -1,6 +1,4 @@
 print_esmf:              .true.
-PE_MEMBER01:             @[TASKS]
-
 start_year:              2018
 start_month:             10
 start_day:               15

tests/RegressionTests_jet.intel.log

@@ -1,6 +1,4 @@
-total_member:            1
 print_esmf:              .true.
-PE_MEMBER01:             108
 start_year:              2018
 start_month:             10
 start_day:               15

tests/RegressionTests_orion.intel.log

@@ -414,7 +414,7 @@ if [[ $TESTS_FILE =~ '35d' ]]; then
   TEST_35D=true
 fi
 
-BL_DATE=20210714
+BL_DATE=20210716
 if [[ $MACHINE_ID = hera.* ]] || [[ $MACHINE_ID = orion.* ]] || [[ $MACHINE_ID = cheyenne.* ]] || [[ $MACHINE_ID = gaea.* ]] || [[ $MACHINE_ID = jet.* ]]; then
   RTPWD=${RTPWD:-$DISKNM/NEMSfv3gfs/develop-${BL_DATE}/${RT_COMPILER^^}}
 else