v0.2.7

MolecularEvolution v0.2.7

Diff since v0.2.6

v0.2.6

MolecularEvolution v0.2.6

Diff since v0.2.5

Merged pull requests:

• Switch to vitepress docs (#51) (@nossleinad)
• Fix config (#52) (@nossleinad)
• Metropolis-Hastings root position sampler (#53) (@nossleinad)

v0.2.5

MolecularEvolution v0.2.5

Diff since v0.2.4

Merged pull requests:

• Acc ratio structure (#50) (@nossleinad)

v0.2.4

MolecularEvolution v0.2.4

Diff since v0.2.3

Merged pull requests:

• Update pattern (#49) (@nossleinad)

v0.2.3

MolecularEvolution v0.2.3

Diff since v0.2.2

v0.2.2

MolecularEvolution v0.2.2

Diff since v0.2.1

Merged pull requests:

• Enforce unique nodenames (#31) (@nossleinad)
• Stack based refactor pt. 2 (#34) (@nossleinad)
• Avoid KeyError (#35) (@nossleinad)
• Migrate from ancient (#36) (@nossleinad)
• Extend optimization methods (#37) (@Glowster)
• Multiple tree viz (#39) (@nossleinad)
• Metropolis extension (#42) (@nossleinad)
• Fixing exp (#43) (@murrellb)
• Moving things from CodonMolEv, and adding some convenience functions (#44) (@murrellb)
• Fix PartitionPartition typo (#45) (@mchernys)

Closed issues:

• Make companion package(s) where method collection will live. (#11)
• MCMC over trees for posterior inference. (#23)
• Issue with alignments that have lack a nucleotide (#30)

v0.2.1

MolecularEvolution v0.2.1

Diff since v0.2.0

• Fix return type (#33)

Merged pull requests:

• Type getnodelist and co. return arrays (#33) (@nossleinad)

Closed issues:

• getnodelist and co. - return type instability (#32)

v0.2.0

MolecularEvolution v0.2.0

Diff since v0.1.0

Merged pull requests:

• Add Brent's method for minimization (#15) (@nossleinad)
• Avoid deepcopy pt. 2 (#16) (@nossleinad)
• Replace deepcopy (#18) (@nossleinad)
• Fix issue #19 (#20) (@nossleinad)
• LazyPartition (#21) (@nossleinad)
• Stack based refactor (#22) (@Glowster)
• Fix binarize! during newick import (#24) (@nossleinad)
• Be consistent with message type declaration (#26) (@nossleinad)

Closed issues:

• Inconsistencies and optimization regarding obs2partition! (#19)
• Message type declaration (#25)

v0.1.0

MolecularEvolution v0.1.0

Merged pull requests:

• format code (#4) (@bicycle1885)
• make sim_tree faster for large N (#5) (@bicycle1885)
• optimize combine! for DiscretePartition (#8) (@bicycle1885)
• make sibling_inds type stable (#9) (@bicycle1885)