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Update pattern#49

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nossleinad merged 13 commits intoMurrellGroup:mainMurrellGroup/MolecularEvolution.jl:mainfrom nossleinad:update-patternnossleinad/MolecularEvolution.jl:update-patternCopy head branch name to clipboardFeb 26, 2025

Commits

Commits on Oct 27, 2024

• Add felsenstein_roundtrip and root_optim

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• Update docstring

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Commits on Oct 30, 2024

• Make user-defined optimization more flexible

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• Make compat with 1.6

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Commits on Jan 16, 2025

• Add root_position_sample

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• Merge branch 'metropolis-ext' into root_optim

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Commits on Jan 17, 2025

• Make update return root and patch typo in bl_opt

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Commits on Jan 21, 2025

• Save progress (not tested or intended to run even)

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Commits on Jan 25, 2025

• Merge branch 'main' into update-pattern

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Commits on Feb 22, 2025

• Update interface with model updates. Compat with PhyloT

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• Fix typo

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• Some comments

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Commits on Feb 26, 2025

• Update docs and enforce default behaviour for collapse_models

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