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Alignment free deduplication #621

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Alignment free deduplication

Alignment free deduplication #621

Triggered via pull request April 29, 2024 14:17
@Joon-KlapsJoon-Klaps
synchronize #87
27-deduplicate-umis-at-fastq-level
Status Failure
Total duration 7m 35s
Artifacts –

ci.yml

on: pull_request
Matrix: Run pipeline with minimal test data and different cluster methods
Matrix: Run pipeline with test bad database for identifying potential references
Matrix: Run pipeline with test bad mapping constrained reference
Matrix: Run complete pipeline with more test data
Matrix: Run pipeline and skip everything
Matrix: Run pipeline with test umi data
Matrix: Run pipeline with test data
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32 errors and 10 warnings
Run pipeline with test data (23.04.0, bcftools, ivar)
Process completed with exit code 1.
Run pipeline with test umi data (23.04.0)
Process completed with exit code 1.
Run pipeline with test data (23.04.0, bcftools, bcftools)
The job was canceled because "_23_04_0_bcftools_ivar" failed.
Run pipeline with test data (23.04.0, bcftools, bcftools)
The operation was canceled.
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-linc...
Process completed with exit code 1.
Run complete pipeline with more test data (23.04.0)
Process completed with exit code 1.
Run pipeline with minimal test data and different cluster methods (latest-everything, cdhitest)
The job was canceled because "latest-everything_mmseq_2" failed.
Run pipeline with minimal test data and different cluster methods (latest-everything, cdhitest)
Process completed with exit code 1.
Run pipeline with test data (latest-everything, ivar, ivar)
The job was canceled because "_23_04_0_bcftools_ivar" failed.
Run pipeline with test data (latest-everything, ivar, ivar)
The operation was canceled.
Run pipeline with test data (latest-everything, bcftools, bcftools)
The job was canceled because "_23_04_0_bcftools_ivar" failed.
Run pipeline with test data (latest-everything, bcftools, bcftools)
The operation was canceled.
Run pipeline with test data (23.04.0, ivar, ivar)
The job was canceled because "_23_04_0_bcftools_ivar" failed.
Run pipeline with test data (23.04.0, ivar, ivar)
The operation was canceled.
Run pipeline with test data (latest-everything, ivar, bcftools)
The job was canceled because "_23_04_0_bcftools_ivar" failed.
Run pipeline with test data (latest-everything, ivar, bcftools)
The operation was canceled.
Run pipeline with test data (23.04.0, ivar, bcftools)
The job was canceled because "_23_04_0_bcftools_ivar" failed.
Run pipeline with test data (23.04.0, ivar, bcftools)
The operation was canceled.
Run pipeline with test data (latest-everything, bcftools, ivar)
The job was canceled because "_23_04_0_bcftools_ivar" failed.
Run pipeline with test data (latest-everything, bcftools, ivar)
The operation was canceled.
Run pipeline with test umi data (latest-everything)
The job was canceled because "_23_04_0" failed.
Run pipeline with test umi data (latest-everything)
The operation was canceled.
Run pipeline with minimal test data and different cluster methods (latest-everything, vsearch)
The job was canceled because "latest-everything_mmseq_2" failed.
Run pipeline with minimal test data and different cluster methods (latest-everything, vsearch)
The operation was canceled.
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-clus...
The job was canceled because "latest-everything_mmseq_2" failed.
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-clus...
The operation was canceled.
Run pipeline with minimal test data and different cluster methods (latest-everything, mash)
The job was canceled because "latest-everything_mmseq_2" failed.
Run pipeline with minimal test data and different cluster methods (latest-everything, mash)
The operation was canceled.
Run complete pipeline with more test data (latest-everything)
The job was canceled because "_23_04_0" failed.
Run complete pipeline with more test data (latest-everything)
The operation was canceled.
Run pipeline with minimal test data and different cluster methods (latest-everything, vrhyme)
The job was canceled because "latest-everything_mmseq_2" failed.
Run pipeline with minimal test data and different cluster methods (latest-everything, vrhyme)
The operation was canceled.
Run pipeline and skip everything (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline and skip everything (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad database for identifying potential references (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad database for identifying potential references (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad mapping constrained reference (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad mapping constrained reference (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0, bcftools, ivar)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test umi data (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-linc...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run complete pipeline with more test data (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.