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Alignment free deduplication #619

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Alignment free deduplication

Alignment free deduplication #619

Triggered via pull request April 29, 2024 13:24
@Joon-KlapsJoon-Klaps
synchronize #87
27-deduplicate-umis-at-fastq-level
Status Cancelled
Total duration 11m 31s
Artifacts –

ci.yml

on: pull_request
Matrix: Run pipeline with minimal test data and different cluster methods
Matrix: Run pipeline with test bad database for identifying potential references
Matrix: Run pipeline with test bad mapping constrained reference
Matrix: Run complete pipeline with more test data
Matrix: Run pipeline and skip everything
Matrix: Run pipeline with test umi data
Matrix: Run pipeline with test data
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25 errors and 12 warnings
Run pipeline with test umi data (latest-everything)
Process completed with exit code 1.
Run pipeline with test umi data (23.04.0)
The job was canceled because "latest-everything" failed.
Run pipeline with test umi data (23.04.0)
The operation was canceled.
Run pipeline with test data (23.04.0, ivar, ivar)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (23.04.0, ivar, ivar)
The operation was canceled.
Run pipeline with test data (latest-everything, bcftools, bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything, bcftools, bcftools)
The operation was canceled.
Run pipeline with minimal test data and different cluster methods (latest-everything, vsearch)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with minimal test data and different cluster methods (latest-everything, vsearch)
The operation was canceled.
Run pipeline with test data (23.04.0, bcftools, bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (23.04.0, bcftools, bcftools)
The operation was canceled.
Run pipeline with test data (23.04.0, bcftools, ivar)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (23.04.0, bcftools, ivar)
The operation was canceled.
Run pipeline with test data (latest-everything, bcftools, ivar)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything, bcftools, ivar)
The operation was canceled.
Run pipeline with test data (latest-everything, ivar, bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything, ivar, bcftools)
The operation was canceled.
Run complete pipeline with more test data (latest-everything)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run complete pipeline with more test data (latest-everything)
The operation was canceled.
Run complete pipeline with more test data (23.04.0)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run complete pipeline with more test data (23.04.0)
The operation was canceled.
Run pipeline with test data (latest-everything, ivar, ivar)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (latest-everything, ivar, ivar)
The operation was canceled.
Run pipeline with test data (23.04.0, ivar, bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-87' exists
Run pipeline with test data (23.04.0, ivar, bcftools)
The operation was canceled.
Run pipeline and skip everything (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline and skip everything (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad mapping constrained reference (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test umi data (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad database for identifying potential references (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad database for identifying potential references (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test bad mapping constrained reference (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-linc...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with minimal test data and different cluster methods (latest-everything, cdhitest)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with minimal test data and different cluster methods (latest-everything, mmseqs-clus...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with minimal test data and different cluster methods (latest-everything, vrhyme)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with minimal test data and different cluster methods (latest-everything, mash)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.