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making use of SeqIO iterator to avoid OOM #981

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making use of SeqIO iterator to avoid OOM

making use of SeqIO iterator to avoid OOM #981

Triggered via push February 13, 2025 14:59
@Joon-KlapsJoon-Klaps
pushed 2588647
dev
Status Failure
Total duration 10m 28s
Artifacts –

ci.yml

on: push
Matrix: test-cluster-methods
Matrix: test-others
Matrix: test-variant-callers
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45 errors
Run pipeline with various test profiles (test_fail_db) | (latest-everything) | (docker)
Process completed with exit code 1.
Run pipeline with various test profiles (test_fail_db) | (24.04.2) | (docker)
The job was canceled because "latest-everything_docke_4" failed.
Run pipeline with various test profiles (test_fail_db) | (24.04.2) | (docker)
The operation was canceled.
Run pipeline with various test profiles (test_full) | (24.04.2) | (docker)
The job was canceled because "latest-everything_docke_4" failed.
Run pipeline with various test profiles (test_full) | (24.04.2) | (docker)
The operation was canceled.
Run pipeline with various test profiles (test_umi) | (24.04.2) | (docker)
The job was canceled because "latest-everything_docke_4" failed.
Run pipeline with various test profiles (test_umi) | (24.04.2) | (docker)
The operation was canceled.
Run pipeline with various test profiles (test_full) | (latest-everything) | (docker)
The job was canceled because "latest-everything_docke_4" failed.
Run pipeline with various test profiles (test_full) | (latest-everything) | (docker)
The operation was canceled.
Run pipeline with various test profiles (test_umi) | (latest-everything) | (docker)
The job was canceled because "latest-everything_docke_4" failed.
Run pipeline with various test profiles (test_umi) | (latest-everything) | (docker)
The operation was canceled.
Run pipeline with test data (latest-everything) | (docker) | (cdhitest)
Process completed with exit code 1.
Run pipeline with test data (latest-everything) | (docker) | (mmseqs-cluster)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (latest-everything) | (docker) | (mmseqs-cluster)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (cdhitest)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (24.04.2) | (docker) | (cdhitest)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (mash)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (24.04.2) | (docker) | (mash)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (mmseqs-cluster)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (24.04.2) | (docker) | (mmseqs-cluster)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (mmseqs-linclust)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (24.04.2) | (docker) | (mmseqs-linclust)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (vsearch)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (24.04.2) | (docker) | (vsearch)
The operation was canceled.
Run pipeline with test data (latest-everything) | (docker) | (vsearch)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (latest-everything) | (docker) | (vsearch)
The operation was canceled.
Run pipeline with test data (latest-everything) | (docker) | (mmseqs-linclust)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (latest-everything) | (docker) | (mmseqs-linclust)
The operation was canceled.
Run pipeline with test data (latest-everything) | (docker) | (mash)
The job was canceled because "latest-everything_cdhites" failed.
Run pipeline with test data (latest-everything) | (docker) | (mash)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (bcftools - bcftools)
Process completed with exit code 1.
Run pipeline with test data (latest-everything) | (docker) | (bcftools - ivar)
The job was canceled because "_24_04_2_bcftools_bcftool" failed.
Run pipeline with test data (latest-everything) | (docker) | (bcftools - ivar)
The operation was canceled.
Run pipeline with test data (latest-everything) | (docker) | (ivar - ivar)
The job was canceled because "_24_04_2_bcftools_bcftool" failed.
Run pipeline with test data (latest-everything) | (docker) | (ivar - ivar)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (ivar - bcftools)
The job was canceled because "_24_04_2_bcftools_bcftool" failed.
Run pipeline with test data (24.04.2) | (docker) | (ivar - bcftools)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (bcftools - ivar)
The job was canceled because "_24_04_2_bcftools_bcftool" failed.
Run pipeline with test data (24.04.2) | (docker) | (bcftools - ivar)
The operation was canceled.
Run pipeline with test data (latest-everything) | (docker) | (ivar - bcftools)
The job was canceled because "_24_04_2_bcftools_bcftool" failed.
Run pipeline with test data (latest-everything) | (docker) | (ivar - bcftools)
The operation was canceled.
Run pipeline with test data (24.04.2) | (docker) | (ivar - ivar)
The job was canceled because "_24_04_2_bcftools_bcftool" failed.
Run pipeline with test data (24.04.2) | (docker) | (ivar - ivar)
The operation was canceled.
Run pipeline with test data (latest-everything) | (docker) | (bcftools - bcftools)
The job was canceled because "_24_04_2_bcftools_bcftool" failed.
Run pipeline with test data (latest-everything) | (docker) | (bcftools - bcftools)
The operation was canceled.