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Include samtools stats pre dedup & post dedup in overview tables #967

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Include samtools stats pre dedup & post dedup in overview tables

Include samtools stats pre dedup & post dedup in overview tables #967

Triggered via pull request January 30, 2025 11:54
@Joon-KlapsJoon-Klaps
opened #163
include-stats-before-dedup
Status Cancelled
Total duration 1m 4s
Artifacts –

ci.yml

on: pull_request
Matrix: test-cluster-methods
Matrix: test-others
Matrix: test-variant-callers
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Run pipeline with test data (latest-everything) | (docker) | (mmseqs-linclust)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (mash)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (bcftools - ivar)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (ivar - bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_fail_mapped) | (24.04.2) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_fail_db) | (latest-everything) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (mash)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_umi) | (latest-everything) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (bcftools - ivar)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_full) | (24.04.2) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_full) | (latest-everything) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (vsearch)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_fail_mapped) | (latest-everything) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (cdhitest)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (bcftools - bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (mmseqs-cluster)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (bcftools - bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (ivar - bcftools)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_nothing) | (latest-everything) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (vsearch)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (mmseqs-linclust)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_nothing) | (24.04.2) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (ivar - ivar)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_fail_db) | (24.04.2) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with various test profiles (test_umi) | (24.04.2) | (docker)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (cdhitest)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (latest-everything) | (docker) | (ivar - ivar)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists
Run pipeline with test data (24.04.2) | (docker) | (mmseqs-cluster)
Canceling since a higher priority waiting request for 'nf-core CI-163' exists