I'm currently learning analyzing single-cell transcriptomic and epigenomic data. Coding mainly in R and python.
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MyFirstPullRequest
MyFirstPullRequest PublicForked from COGS108/MyFirstPullRequest
To be used for the assignments in Cogs 108
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vertebrateGutSamples-microbiomeDiversity-analysis
vertebrateGutSamples-microbiomeDiversity-analysis PublicAnalysis of vertebrate gut samples (3/4 wildlife) with focus on: 0) implementation of shogun & woltka for species level characterization of microbiome communities 1) microbiome alpha diversity 2) m…
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vertebrateGutSamples-strainPhylosymbiosis-analysis
vertebrateGutSamples-strainPhylosymbiosis-analysis PublicAnalysis of vertebrate gut samples (3/4 wildlife) with focus on: 0) custom implementation of BioBakery3 tools for optimal strain tree per bacteria 1) strain tree visualization 2) mantel spearman st…
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vert-project
vert-project PublicThe meta-analysis consists of two parts: 1) microbiome composition and diversity analysis 2) strain phylosymbiosis analysis. The associated studies ( available on Qiita as studyID 2338, 11166, 1121…
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9 contributions in the last year
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Contribution activity
June 2025
Created an issue in marbl/verkko that received 5 comments
Test run failed on AssertionError forbid_unbridged_tangles.py
Hi developers,
My test run with the e coli assembly got
Traceback (most recent call last): File "/tscc/projects/ps-renlab2/jhc103/miniconda3-storag…