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JHCCoder/README.md

Hi there 👋

I'm currently learning analyzing single-cell transcriptomic and epigenomic data. Coding mainly in R and python.

Popular repositories Loading

  1. COGS108_Repo COGS108_Repo Public

  2. MyFirstPullRequest MyFirstPullRequest Public

    Forked from COGS108/MyFirstPullRequest

    To be used for the assignments in Cogs 108

  3. cophylogeny-analysis cophylogeny-analysis Public

    Jupyter Notebook

  4. vertebrateGutSamples-microbiomeDiversity-analysis vertebrateGutSamples-microbiomeDiversity-analysis Public

    Analysis of vertebrate gut samples (3/4 wildlife) with focus on: 0) implementation of shogun & woltka for species level characterization of microbiome communities 1) microbiome alpha diversity 2) m…

    Jupyter Notebook

  5. vertebrateGutSamples-strainPhylosymbiosis-analysis vertebrateGutSamples-strainPhylosymbiosis-analysis Public

    Analysis of vertebrate gut samples (3/4 wildlife) with focus on: 0) custom implementation of BioBakery3 tools for optimal strain tree per bacteria 1) strain tree visualization 2) mantel spearman st…

    Jupyter Notebook

  6. vert-project vert-project Public

    The meta-analysis consists of two parts: 1) microbiome composition and diversity analysis 2) strain phylosymbiosis analysis. The associated studies ( available on Qiita as studyID 2338, 11166, 1121…

    Jupyter Notebook

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Contribution activity

June 2025

Created an issue in marbl/verkko that received 5 comments

Test run failed on AssertionError forbid_unbridged_tangles.py

Hi developers, My test run with the e coli assembly got Traceback (most recent call last): File "/tscc/projects/ps-renlab2/jhc103/miniconda3-storag…

5 comments
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