BoWT and DenseBoWT #185
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: test | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| allow-softlinks: true | |
| channel-priority: flexible | |
| show-channel-urls: true | |
| - name: Install dependencies | |
| run: | | |
| conda install --yes pip | |
| pip install coverage | |
| pip install coveralls | |
| conda install --yes numpy scipy scikit-learn nltk pytest microtc>=2.4.13 b4msa evodag cython ingeoml>=0.0.26 | |
| pip install jax | |
| pip install optax | |
| python -c "import nltk; nltk.download('stopwords')" | |
| python setup.py build_ext --inplace | |
| - name: Tests on Linux | |
| if: ${{ runner.os == 'Linux' }} | |
| run: | | |
| which python | |
| python --version | |
| which coverage | |
| coverage run -m pytest EvoMSA/tests | |
| - name: Tests on macOS and Windows | |
| if: ${{ runner.os != 'Linux' }} | |
| run: | | |
| python -m pytest EvoMSA/tests | |
| - name: coveralls | |
| if: ${{ runner.os == 'Linux' }} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| coveralls --service=github |