Update externals to match beta05 (#371)

Tag name (required for release branches): sima0_03_001
Originator(s): peverwhee

Description (include the issue title, and the keyword ['closes',
'fixes', 'resolves'] followed by the issue number):

- Updates externals to match [CESM beta05
tag](https://github.com/ESCOMP/CESM/releases/tag/cesm3_0_beta05)
- Add CUPiD external
- Adds additional git-fleximod workflow test
- Small fix to test_driver.sh to agree with new externals

closes #361 

Describe any changes made to build system: n/a

Describe any changes made to the namelist: n/a

List any changes to the defaults for the input datasets (e.g. boundary
datasets): n/a

List all files eliminated and why: n/a

List all files added and what they do:
A tools/CUPiD
- add new CUPiD submodule

List all existing files that have been modified, and describe the
changes:
(Helpful git command: `git diff --name-status
development...<your_branch_name>`)

M  .github/workflows/fleximod-test.yaml
- add new test to confirm what is checked out with git-fleximod matches
the expected submodules

M .gitmodules
- update externals to match beta05

M ccs_config
M cime
M components/cdeps
M components/cism
M components/clm
M components/cmeps
M components/mizuRoute
M components/mosart
M components/rtm
M libraries/FMS
M libraries/parallelio
M share
- submodule updates

M test/system/test_driver.sh
- Remove `--queue` argument from `testargs` for derecho (to match CAM
usage)

If there are new failures (compared to the
`test/existing-test-failures.txt` file),
have them OK'd by the gatekeeper, note them here, and add them to the
file.
If there are baseline differences, include the test and the reason for
the
diff. What is the nature of the change? Roundoff?

derecho/intel/aux_sima: All NLFAIL due to NUOPC external update

derecho/gnu/aux_sima: All NLFAIL due to NUOPC external update

If this changes climate describe any run(s) done to evaluate the new
climate in enough detail that it(they) could be reproduced: n/a

CAM-SIMA date used for the baseline comparison tests if different than
latest:

Author: peverwhee

.github/workflows/fleximod_test.yaml

@@ -4,6 +4,7 @@ jobs:
   fleximod-test:
     runs-on: ubuntu-latest
     strategy:
+      fail-fast: false
       matrix:
         # oldest supported and latest supported
         python-version: ["3.8", "3.x"]
@@ -13,6 +14,15 @@ jobs:
       - id: run-fleximod
         run: |
           $GITHUB_WORKSPACE/bin/git-fleximod update
+          echo
+          echo "Update complete, checking status"
+          echo
           $GITHUB_WORKSPACE/bin/git-fleximod test
+      - id: check-cleanliness
+        run: |
+          echo
+          echo "Checking if git fleximod matches expected externals"
+          echo
+          git diff --exit-code
         
           

.gitmodules

@@ -26,49 +26,49 @@
 [submodule "ccs_config"]
         path          = ccs_config
         url           = https://github.com/ESMCI/ccs_config_cesm.git
-        fxtag         = ccs_config_cesm0.0.106
+        fxtag         = ccs_config_cesm1.0.21
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git
 [submodule "cdeps"]
         path          = components/cdeps
         url           = https://github.com/ESCOMP/CDEPS.git
-        fxtag         = cdeps1.0.34
+        fxtag         = cdeps1.0.61
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git
 [submodule "cice"]
         path          = components/cice
         url           = https://github.com/ESCOMP/CESM_CICE
-        fxtag         = cesm_cice6_5_0_10
+        fxtag         = cesm_cice6_6_0_6
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESCOMP/CESM_CICE
 [submodule "cime"]
         path          = cime
         url           = https://github.com/ESMCI/cime
-        fxtag         = cime6.0.246
+        fxtag         = cime6.1.58
         fxrequired    = ToplevelRequired
 	fxDONOTUSEurl = https://github.com/ESMCI/cime
 [submodule "cism"]
         path          = components/cism
         url           = https://github.com/ESCOMP/CISM-wrapper
-        fxtag         = cismwrap_2_2_001
+        fxtag         = cismwrap_2_2_005
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESCOMP/CISM-wrapper
 [submodule "clm"]
         path          = components/clm
         url           = https://github.com/ESCOMP/CTSM
-        fxtag         = ctsm5.2.007
+        fxtag         = ctsm5.3.017
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESCOMP/CTSM
 [submodule "cmeps"]
         path          = components/cmeps
         url           = https://github.com/ESCOMP/CMEPS.git
-        fxtag         = cmeps0.14.67
+        fxtag         = cmeps1.0.33
         fxrequired    = ToplevelRequired
 	fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git
 [submodule "fms"]
         path          = libraries/FMS
         url           = https://github.com/ESCOMP/FMS_interface
-        fxtag         = fi_240516
+        fxtag         = fi_240828
         fxrequired    = ToplevelRequired
 	fxDONOTUSEurl = https://github.com/ESCOMP/FMS_interface
 [submodule "mct"]
@@ -80,30 +80,37 @@
 [submodule "mizuRoute"]
         path          = components/mizuRoute
         url           = https://github.com/ESCOMP/mizuRoute
-        fxtag         = cesm-coupling.n02_v2.1.2
+        fxtag         = cesm-coupling.n03_v2.2.0
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESCOMP/mizuRoute
 [submodule "mosart"]
         path          = components/mosart
         url           = https://github.com/ESCOMP/MOSART
-        fxtag         = mosart1_0_49
+        fxtag         = mosart1.1.07
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESCOMP/MOSART
 [submodule "parallelio"]
         path          = libraries/parallelio
         url           = https://github.com/NCAR/ParallelIO
-        fxtag         = pio2_6_2
+        fxtag         = pio2_6_3
         fxrequired    = ToplevelRequired
 	fxDONOTUSEurl = https://github.com/NCAR/ParallelIO
 [submodule "rtm"]
         path          = components/rtm
         url           = https://github.com/ESCOMP/RTM
-        fxtag         = rtm1_0_79
+        fxtag         = rtm1_0_84
         fxrequired    = ToplevelRequired
         fxDONOTUSEurl = https://github.com/ESCOMP/RTM
 [submodule "share"]
         path          = share
         url           = https://github.com/ESCOMP/CESM_share
-        fxtag         = share1.0.19
+        fxtag         = share1.1.9
         fxrequired    = ToplevelRequired
-        fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share
+	fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share
+[submodule "tools/CUPiD"]
+	path = tools/CUPiD
+	url = https://github.com/NCAR/CUPiD.git
+	fxtag         = v0.1.4
+	fxrequired    = ToplevelRequired
+	fxDONOTUSEurl = https://github.com/NCAR/CUPiD.git
+

ccs_config

@@ -570,7 +570,7 @@ if [ "${cesm_test_suite}" != "none" -a -n "${cesm_test_mach}" ]; then
     case $hostname in
         # derecho
         derec* | dec* )
-          testargs="${testargs} --queue ${CAM_BATCHQ} --test-root ${cesm_testdir} --output-root ${cesm_testdir}"
+          testargs="${testargs} --test-root ${cesm_testdir} --output-root ${cesm_testdir}"
           ;;
         # casper
         casper* | crhtc* )