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Deplancke's Lab

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  1. BRB-seqTools BRB-seqTools Public

    Suite of tools for processing BRB-seq data

    Java 27 9

  2. ASAP ASAP Public

    ASAP : Automated Single-cell Analysis Pipeline

    Java 25 10

  3. ChromatinHD ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    Python 22

  4. Live-seq Live-seq Public

    Live-seq

    R 8 5

  5. Chromatin_modules Chromatin_modules Public

    Chromatin Modules across cell types.The code

    Jupyter Notebook 4

  6. SSPCI SSPCI Public

    Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data

    R 3

Repositories

Showing 10 of 35 repositories
  • scfair Public

    an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.

    DeplanckeLab/scfair’s past year of commit activity
    Ruby 0 0 13 0 Updated Feb 21, 2025
  • FastReadCounter Public

    Tool for fast counting of reads from BAM file into genomic ranges (GTF, BED, VCF)

    DeplanckeLab/FastReadCounter’s past year of commit activity
    Java 0 GPL-3.0 0 2 0 Updated Feb 21, 2025
  • Neuro_Droso_ND75KD Public

    ND75KD project

    DeplanckeLab/Neuro_Droso_ND75KD’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Feb 20, 2025
  • dgrpool_web Public

    DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.

    DeplanckeLab/dgrpool_web’s past year of commit activity
    Ruby 0 GPL-3.0 0 0 0 Updated Feb 17, 2025
  • EXTRA-seq Public

    Scripts for the EXTRA-seq manuscript

    DeplanckeLab/EXTRA-seq’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 15, 2025
  • Context-TFs Public

    Material and source code for Kribelbauer et al.

    DeplanckeLab/Context-TFs’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 1 0 0 Updated Feb 3, 2025
  • asap_old Public

    ASAP container for running old website (v1)

    DeplanckeLab/asap_old’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jan 14, 2025
  • asap_web Public

    ASAP container for hosting the web portal

    DeplanckeLab/asap_web’s past year of commit activity
    0 0 1 0 Updated Jan 9, 2025
  • asap_run Public

    ASAP container for running all pipeline code

    DeplanckeLab/asap_run’s past year of commit activity
    R 0 GPL-3.0 0 2 0 Updated Jan 7, 2025
  • ChromatinHD_manuscript Public
    DeplanckeLab/ChromatinHD_manuscript’s past year of commit activity
    Python 1 0 0 0 Updated Dec 13, 2024
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