Merge pull request #116 from GerritHoogenboom/CSM48

Csm48

Data/DATA.CDE

@@ -1,5 +1,5 @@
 *Codes for Field and Simulated Data
-! DSSAT v4.8; 2021-07-16
+! DSSAT v4.8; 2021-07-27
 
 ! Codes currently used for both simulated and field data are listed in sections
 ! relating to specific model output files. Codes currently only used for field
@@ -113,7 +113,6 @@ L#SM   Leaf number #   Leaf number per stem at maturity
 L#SX   Leaf number #   Leaf number per stem, maximum                            .
 LAIH   LAI harvest     Leaf area index, at harvest                              .
 LAIX   LAI maximum     Leaf area index, maximum                                 .
-LATI   Latitude �      Latitude (degrees)                                       .
 LIWAM  Lint Yld kg/ha  Lint Yield at maturity (kg [dm]/ha)                      .
 LONG   Longitude �     Longitude (degrees)                                      .
 LWAH   Leaf wt kg/ha   Leaf weight at harvest (kg/ha)                           .
@@ -188,6 +187,7 @@ VNAM   Veg N @ matur.  Vegetative N at maturity (kg/ha)
 VWATM  Veg t/h @ matur Vegetative dry matter at maturity (t/ha)                 .
 WSTA   Weather station Weather station                                          .
 WYEAR  Weather year    Year for weather data (for forecast ensembles)           .
+XLAT   Latitude �      Latitude (degrees)                                       .
 YDWAH  Yield, dry t/ha Yield dry weight at harvest (t/ha)                       .
 YPEM   Yd-ET Prod      Yield-ET productivity (kg[yield]/ha/mm[ET])              .
 YPIM   Yd-Irrig Prod   Yield-irrigation productivity (kg[yield]/ha/mm[irrig])   .

Data/DSSATPRO.L48.in

@@ -23,14 +23,12 @@ DDE // @CMAKE_INSTALL_PREFIX@
 TOG // @CMAKE_INSTALL_PREFIX@/TOOLS/GBUILD GBUILD.EXE
 
 MAL // @CMAKE_INSTALL_PREFIX@ dscsm048 PRFRM048
-MAR // @CMAKE_INSTALL_PREFIX@
 MBA // @CMAKE_INSTALL_PREFIX@ dscsm048 CSCER048
 MBH // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MBM // @CMAKE_INSTALL_PREFIX@ dscsm048 PRFRM048
 MBN // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MBR // @CMAKE_INSTALL_PREFIX@ dscsm048 PRFRM048
 MBS // @CMAKE_INSTALL_PREFIX@ dscsm048 BSCER048
-MBW // @CMAKE_INSTALL_PREFIX@
 MCB // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MCH // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MCT // @CMAKE_INSTALL_PREFIX@
@@ -49,12 +47,10 @@ MML // @CMAKE_INSTALL_PREFIX@ dscsm048 MLCER048
 MMZ // @CMAKE_INSTALL_PREFIX@ dscsm048 MZCER048
 MNN // @CMAKE_INSTALL_PREFIX@
 MNP // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
-MOA // @CMAKE_INSTALL_PREFIX@
 MPE // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MPI // @CMAKE_INSTALL_PREFIX@ dscsm048 PIALO048
 MPN // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MPO // @CMAKE_INSTALL_PREFIX@ dscsm048 PRFRM048
-MAR // @CMAKE_INSTALL_PREFIX@
 MPP // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MPR // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MPT // @CMAKE_INSTALL_PREFIX@ dscsm048 PTSUB048
@@ -74,14 +70,12 @@ MTM // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
 MTN // @CMAKE_INSTALL_PREFIX@ dscsm048 TNARO048
 MTR // @CMAKE_INSTALL_PREFIX@ dscsm048 TRARO048
 MVB // @CMAKE_INSTALL_PREFIX@ dscsm048 CRGRO048
-MVI // @CMAKE_INSTALL_PREFIX@
 MWH // @CMAKE_INSTALL_PREFIX@ dscsm048 CSCER048
 MOT // @CMAKE_INSTALL_PREFIX@
 MU1 // @CMAKE_INSTALL_PREFIX@
 MU2 // @CMAKE_INSTALL_PREFIX@
 MIO // @CMAKE_INSTALL_PREFIX@
 MLO // @CMAKE_INSTALL_PREFIX@
-MG0 // @CMAKE_INSTALL_PREFIX@ dscsm048 PRFRM048
 
 MGR // @CMAKE_INSTALL_PREFIX@
 NSH // @CMAKE_INSTALL_PREFIX@
@@ -103,7 +97,6 @@ APK // @CMAKE_INSTALL_PREFIX@ DISC9801.EXE
 TOE // /WINDOWS NOTEPAD.EXE
 TOS // /
 TOM // /
-BGD // @CMAKE_INSTALL_PREFIX@/BACKGROUND
 STD // @CMAKE_INSTALL_PREFIX@/StandardData
 CDD // @CMAKE_INSTALL_PREFIX@
 WED // @CMAKE_INSTALL_PREFIX@/Weather
@@ -116,14 +109,12 @@ FID // @CMAKE_INSTALL_PREFIX@/Background
 ALD // @CMAKE_INSTALL_PREFIX@/Alfalfa
 GCD // @CMAKE_INSTALL_PREFIX@/GCWork
 GUD // @CMAKE_INSTALL_PREFIX@/GLWork
-ARD // @CMAKE_INSTALL_PREFIX@/
 BAD // @CMAKE_INSTALL_PREFIX@/Barley
 BHD // @CMAKE_INSTALL_PREFIX@/Bahia
 BMD // @CMAKE_INSTALL_PREFIX@/Bermudagrass
 BND // @CMAKE_INSTALL_PREFIX@/Drybean
 BRD // @CMAKE_INSTALL_PREFIX@/Brachiaria
 BSD // @CMAKE_INSTALL_PREFIX@/Sugarbeet
-BWD // @CMAKE_INSTALL_PREFIX@/
 CBD // @CMAKE_INSTALL_PREFIX@/Cabbage
 CHD // @CMAKE_INSTALL_PREFIX@/Chickpea
 CID // @CMAKE_INSTALL_PREFIX@/Chia
@@ -136,13 +127,11 @@ CVD // @CMAKE_INSTALL_PREFIX@/Clover
 FAD // @CMAKE_INSTALL_PREFIX@/Fallow
 FBD // @CMAKE_INSTALL_PREFIX@/Fababean
 GBD // @CMAKE_INSTALL_PREFIX@/GreenBean
-GWD // @CMAKE_INSTALL_PREFIX@/Weeds
 LTD // @CMAKE_INSTALL_PREFIX@/Lentil
 MLD // @CMAKE_INSTALL_PREFIX@/Millet
 MZD // @CMAKE_INSTALL_PREFIX@/Maize
 NND // @CMAKE_INSTALL_PREFIX@/Banana
 NPD // @CMAKE_INSTALL_PREFIX@/Napier
-OAD // @CMAKE_INSTALL_PREFIX@/Oats
 PED // @CMAKE_INSTALL_PREFIX@/Pea
 PID // @CMAKE_INSTALL_PREFIX@/Pineapple
 PND // @CMAKE_INSTALL_PREFIX@/Peanut
@@ -166,7 +155,6 @@ TMD // @CMAKE_INSTALL_PREFIX@/Tomato
 TND // @CMAKE_INSTALL_PREFIX@/Tanier
 TRD // @CMAKE_INSTALL_PREFIX@/Taro
 VBD // @CMAKE_INSTALL_PREFIX@/Velvetbean
-VID // @CMAKE_INSTALL_PREFIX@/
 WHD // @CMAKE_INSTALL_PREFIX@/Wheat
 U1D // @CMAKE_INSTALL_PREFIX@/CROP1
 U2D // @CMAKE_INSTALL_PREFIX@/CROP2

Data/DSSATPRO.v48

@@ -23,14 +23,12 @@ DDE C: \DSSAT48
 TOG C: \DSSAT48\TOOLS\GBUILD GBUILD.EXE
 
 MAL C: \DSSAT48 DSCSM048.EXE PRFRM048
-MAR C: \DSSAT48
 MBA C: \DSSAT48 DSCSM048.EXE CSCER048
 MBH C: \DSSAT48 DSCSM048.EXE CRGRO048
 MBM C: \DSSAT48 DSCSM048.EXE PRFRM048
 MBN C: \DSSAT48 DSCSM048.EXE CRGRO048
 MBR C: \DSSAT48 DSCSM048.EXE PRFRM048
 MBS C: \DSSAT48 DSCSM048.EXE BSCER048
-MBW C: \DSSAT48
 MCB C: \DSSAT48 DSCSM048.EXE CRGRO048
 MCH C: \DSSAT48 DSCSM048.EXE CRGRO048
 MCN C: \DSSAT48 DSCSM048.EXE CRGRO048
@@ -62,14 +60,12 @@ MTM C: \DSSAT48 DSCSM048.EXE CRGRO048
 MTN C: \DSSAT48 DSCSM048.EXE TNARO048
 MTR C: \DSSAT48 DSCSM048.EXE TRARO048
 MVB C: \DSSAT48 DSCSM048.EXE CRGRO048
-MVI C: \DSSAT48
 MWH C: \DSSAT48 DSCSM048.EXE CSCER048
 MOT C: \DSSAT48
 MU1 C: \DSSAT48
 MU2 C: \DSSAT48
 MIO C: \DSSAT48
 MLO C: \DSSAT48
-MG0 C: \DSSAT48 DSCSM048.EXE PRFRM048
 
 MGR C: \DSSAT48
 NSH C: \DSSAT48
@@ -91,9 +87,7 @@ APK C: \DSSAT48 DISC9801.EXE
 TOE C: \WINDOWS NOTEPAD.EXE
 TOS C: \
 TOM C: \
-BGD C: \DSSAT48\BACKGROUND
 STD C: \DSSAT48\StandardData
-CDD C: \DSSAT48
 WED C: \DSSAT48\Weather
 WGD C: \DSSAT48\WEATHER\GEN
 CLD C: \DSSAT48\WEATHER\CLIMATE
@@ -104,14 +98,12 @@ FID C: \DSSAT48\BACKGROUND
 ALD C: \DSSAT48\ALFALFA
 GCD C: \DSSAT48\GCWork
 GUD C: \DSSAT48\GLWork
-ARD C: \DSSAT48\
 BAD C: \DSSAT48\BARLEY
 BHD C: \DSSAT48\BAHIA
 BMD C: \DSSAT48\Bermudagrass
 BND C: \DSSAT48\DRYBEAN
 BRD C: \DSSAT48\BRACHIARIA
 BSD C: \DSSAT48\SUGARBEET
-BWD C: \DSSAT48\
 CBD C: \DSSAT48\CABBAGE
 CHD C: \DSSAT48\CHICKPEA
 CND C: \DSSAT48\CANOLA
@@ -145,7 +137,6 @@ TMD C: \DSSAT48\TOMATO
 TND C: \DSSAT48\TANIER
 TRD C: \DSSAT48\TARO
 VBD C: \DSSAT48\VELVETBEAN
-VID C: \DSSAT48\
 WHD C: \DSSAT48\Wheat
 U1D C: \DSSAT48\CROP1
 U2D C: \DSSAT48\CROP2

Plant/CROPGRO/OPHARV.for

@@ -221,8 +221,8 @@ C-----------------------------------------------------------------------
       PlantStres % ACTIVE = .FALSE.
       PlantStres % StageName = '                       '
       SELECT CASE (CROP)
-      CASE ('BG','BN','CH','CN','CO','CP','FB','GB','PE','LT',
-     &      'PN','PP','PR','QU','SB','SF','SU','TM','VB')
+      CASE ('BG','BN','CH','CI','CN','CO','CP','FB','GB','PE',
+     &      'LT','PN','PP','PR','QU','SB','SF','SU','TM','VB')
         PlantStres % NSTAGES = 4
         PlantStres % StageName(1)  = 'Emergence -First Flower'
         PlantStres % StageName(2)  = 'First Flower-First Seed'
@@ -265,7 +265,7 @@ C-----------------------------------------------------------------------
 
 !     Set ACTIVE variable to indicate that current phase is active
       SELECT CASE (CROP)
-      CASE ('BG','BN','CH','CN','CO','CP','FB','GB','LT',
+      CASE ('BG','BN','CH','CI','CN','CO','CP','FB','GB','LT',
      &     'PE','PN','PP','PR','QU','SB','SF','SU','TM','VB')
         IF (YRDOY > STGDOY(1) .AND. YRDOY <= STGDOY(5)) THEN
           PlantStres % ACTIVE(1) = .TRUE.
@@ -627,7 +627,7 @@ C-----------------------------------------------------------------------
       ENDDO
 
       SELECT CASE (CROP)
-      CASE ('BN','CH','CN','CP','FB','GB','PE','PP',
+      CASE ('BN','CH','CI','CN','CP','FB','GB','PE','PP',
      &      'PR','SB','TM','VB','LT')
 !     For stage-dependant irrigation - send GSTAGE back to irrig routine
         STNAME(1) = 'Emergence '    !; GSTAGE(1) = "GS001"

Plant/NWHEAT/WH_APSIM.for

@@ -1,5 +1,5 @@
 C=======================================================================
-C COPYRIGHT 1998-2020
+C COPYRIGHT 1998-2021
 C                     DSSAT Foundation
 C                     University of Florida, Gainesville, Florida
 C                     International Fertilizer Development Center

README.md

@@ -1,5 +1,5 @@
 # dssat-csm-os
-The SSAT Cropping System Model
+The DSSAT Cropping System Model
 
 The Decision Support System for Agrotechnology Transfer (DSSAT) Version is a software 
 application program that comprises crop simulation models for over 42 crops (as of Version 4.8).
@@ -131,3 +131,17 @@ One usable examples could be:
     $ cmake -G "Unix Makefiles" -DCMAKE_Fortran_COMPILER=ifort ..
 
 In this example we are specifying the fortran compiler and the kind of project we want as result (make file project). 
+
+## How to Cite DSSAT ##
+
+If you are planning to use DSSAT in any reports or publications, please make sure to refer to the version number you used.
+The version and sub-version numbers can be found in the top section of your output files, e.g., 4.8.X (replace X with current version).
+In addition, please use the following two references for DSSAT and the Cropping System Model. Other related publications can be found
+in the Documentation section under DSSAT References and Model References.
+
+Hoogenboom, G., C.H. Porter, K.J. Boote, V. Shelia, P.W. Wilkens, U. Singh, J.W. White, S. Asseng, J.I. Lizaso, L.P. Moreno, W. Pavan, R. Ogoshi, L.A. Hunt, G.Y. Tsuji, and J.W. Jones. 2019. The DSSAT crop modeling ecosystem. In: p.173-216 [K.J. Boote, editor] Advances in Crop Modeling for a Sustainable Agriculture. Burleigh Dodds Science Publishing, Cambridge, United Kingdom (http://dx.doi.org/10.19103/AS.2019.0061.10)
+
+Hoogenboom, G., C.H. Porter, V. Shelia, K.J. Boote, U. Singh, J.W. White, W. Pavan, F.A.A. Oliveira, L.P. Moreno-Cadena, J.I. Lizaso, S. Asseng, D.N.L. Pequeno, B.A. Kimball, P.D. Alderman, K.R. Thorp, M.R. Jones, S.V. Cuadra, M.S. Vianna, F.J. Villalobos, T.B. Ferreira,  J. Koo, L.A. Hunt, and J.W. Jones. 2021. Decision Support System for Agrotechnology Transfer (DSSAT) Version 4.8 (www.DSSAT.net). DSSAT Foundation, Gainesville, Florida, USA.
+
+Jones, J.W., G. Hoogenboom, C.H. Porter, K.J. Boote, W.D. Batchelor, L.A. Hunt,  P.W. Wilkens, U. Singh, A.J. Gijsman, and J.T. Ritchie. 2003. DSSAT Cropping System Model. European Journal of Agronomy 18:235-265.
+

Utilities/OPSUM.for

@@ -569,7 +569,7 @@ C-------------------------------------------------------------------
   400     FORMAT ('@   RUNNO   TRNO R# O# P# CR MODEL... ',
      &   'EXNAME.. TNAM..................... ',
      &   'FNAM.... WSTA.... WYEAR SOIL_ID... ',
-     &   'LAT............. LONG........... ELEV.....  ',
+     &   '            XLAT            LONG      ELEV  ',
      &   '  SDAT    PDAT    EDAT    ADAT    MDAT    HDAT   HYEAR',
      &   '  DWAP    CWAM    HWAM    HWAH    BWAH  PWAM',
 !    &   '    HWUM  H#AM    H#UM  HIAM  LAIX',