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@DSIMB

DSIMB

Dynamics of Structures and Interactions of Biological Macromolecules

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  1. SWORD2 SWORD2 Public

    SWift and Optimized Recognition of protein Domains

    Perl 28 1

  2. PoincareMSA PoincareMSA Public

    Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparative analysis of their amino acid sequences through multiple se…

    Jupyter Notebook 11 3

  3. MEDUSA MEDUSA Public

    A Deep Learning based protein flexibility prediction tool.

    Perl 8 2

  4. ICARUS ICARUS Public

    Flexible protein structural alignment based on Protein Units

    Perl 6 2

  5. PYTHIA PYTHIA Public

    Deep Learning Approach For Local Protein Conformation Prediction

    Perl 3

  6. pepit pepit Public

    The PepIT program proposes peptides that may interact with a given protein. PepIT is based on a non-sequential alignment algorithm to identify peptide binding sites that share geometrical and physi…

    R 1

Repositories

Showing 10 of 15 repositories
  • PEGASUS Public

    MD-derived protein flexibility prediction

    Python 0 0 0 0 Updated Apr 7, 2025
  • VEP-Benchmark Public
    Python 0 1 0 0 Updated Jan 23, 2025
  • DIONYSUS_data Public
    Python 0 0 0 0 Updated Dec 12, 2024
  • AMBROSIA Public
    Jupyter Notebook 0 0 0 0 Updated Nov 26, 2024
  • ICARUS Public

    Flexible protein structural alignment based on Protein Units

    Perl 6 2 0 0 Updated Nov 16, 2024
  • SWORD2 Public

    SWift and Optimized Recognition of protein Domains

    Perl 28 1 0 0 Updated Sep 23, 2024
  • pepit Public

    The PepIT program proposes peptides that may interact with a given protein. PepIT is based on a non-sequential alignment algorithm to identify peptide binding sites that share geometrical and physicochemical properties with regions on the target protein.

    R 1 0 0 0 Updated Jun 21, 2024
  • CompareCBS Public

    Comparison of carbohydrate binding site (CBS) geometry using a graph-based method

    R 0 MIT 0 0 0 Updated May 28, 2024
  • PoincareMSA Public

    Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparative analysis of their amino acid sequences through multiple sequence alignment. While a direct analysis of the resulting data allows to identify conserved regions, it does not provide a general and broad view on …

    Jupyter Notebook 11 3 3 0 Updated Sep 22, 2023
  • PYTHIA Public

    Deep Learning Approach For Local Protein Conformation Prediction

    Perl 3 0 0 1 Updated Jun 14, 2023
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