Check and Transform R Notebooks

Transform R notebooks to Rmd; Add checks for R notebooks; Small mod to checks in Python notebooks #28

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Run time

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Job	Run time
test-R-notebooks (PM1)	8m 35s
test-R-notebooks (PM2)	8m 35s
test-R-notebooks (PM3)	8m 34s
test-R-notebooks (PM4)	8m 35s
test-R-notebooks (PM5)	8m 34s
test-R-notebooks (CM1)	8m 35s
test-R-notebooks (CM2)	8m 35s
test-R-notebooks (CM3)	8m 32s
test-R-notebooks (AC1)	8m 34s
test-R-notebooks (AC2)	8m 34s
test-R-notebooks (T)	8m 33s
	1h 34m 16s